Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_G13
         (779 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   5.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   5.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   7.4  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 230 ISVVLSNIHAVFSECLFCTEIYVYDFEKKKN*NLKI 123
           + V +S    V   CL+  +IY+  F+  KN   K+
Sbjct: 740 LCVAISLSATVTLVCLYSPKIYIILFQPDKNIRRKV 775


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 155 NRIHKFRCKTNIQRTRRV 208
           ++IH +RC+T  + TR+V
Sbjct: 202 DQIHGYRCRTMHRLTRQV 219


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 155 NRIHKFRCKTNIQRTRRV 208
           ++IH +RC+T  + TR+V
Sbjct: 202 DQIHGYRCRTMHRLTRQV 219


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 230 ISVVLSNIHAVFSECLFCTEIYVYDFEKKKN*NLKI 123
           + V +S    V   CL+  +IY+  F+  KN   K+
Sbjct: 830 LCVAISLSATVTLVCLYSPKIYIILFQPDKNIRRKV 865


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -1

Query: 248 ALLAVFISVVLSNIHAVFSECLFCTEIYVYDFEKKKN 138
           AL    +SV +S   +V   CLF  ++Y+     ++N
Sbjct: 876 ALRITSMSVTISLSASVTIACLFSPKLYIILIRPERN 912


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,523
Number of Sequences: 438
Number of extensions: 4308
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)