Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_G11
(842 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 127 2e-30
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 125 9e-30
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 94 3e-20
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 45 1e-05
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 33 0.051
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 33 0.051
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 32 0.089
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 32 0.089
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 30 0.36
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 30 0.47
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 29 1.1
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 1.1
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 28 1.4
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 28 1.9
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 27 3.3
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 27 4.4
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 27 4.4
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 27 4.4
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.8
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.8
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 26 5.8
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 26 5.8
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 26 7.7
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 26 7.7
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 26 7.7
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 26 7.7
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 26 7.7
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 127 bits (307), Expect = 2e-30
Identities = 58/106 (54%), Positives = 79/106 (74%)
Frame = -2
Query: 577 KVXFSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSD 398
K SKEEI+RMV+EAEKY+ ED+ + IQAKN LESY +S++++++D LK+K+ SD
Sbjct: 505 KGRLSKEEIDRMVSEAEKYKAEDEAETSRIQAKNHLESYAYSLRNSLDDPNLKDKVDASD 564
Query: 397 KQTILDKCNDTIKWLDSNQLADKEEYEHKQKELEGIYNPIITKMYQ 260
K+ I +TI+WLD N A K+EYE KQKELEG+ NPI+ K+YQ
Sbjct: 565 KEAIDKAVKETIEWLDHNTTAAKDEYEDKQKELEGVANPIMAKIYQ 610
Score = 50.0 bits (114), Expect = 4e-07
Identities = 24/33 (72%), Positives = 25/33 (75%)
Frame = -1
Query: 671 VTXDXDANGILNVSAIEKSPNKEXKITITXDKG 573
VT D DANGILNVSA+EK K KITIT DKG
Sbjct: 474 VTFDVDANGILNVSALEKGTGKTQKITITNDKG 506
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 125 bits (301), Expect = 9e-30
Identities = 57/106 (53%), Positives = 79/106 (74%)
Frame = -2
Query: 577 KVXFSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSD 398
K SKEEI+RMV EAEKY+ ED+ + IQAKN LESY +S++++++D LK+K+ SD
Sbjct: 505 KGRLSKEEIDRMVAEAEKYKAEDEAESGRIQAKNHLESYAYSLRNSLDDPNLKDKVDASD 564
Query: 397 KQTILDKCNDTIKWLDSNQLADKEEYEHKQKELEGIYNPIITKMYQ 260
K+T+ +TI+WLDSN A K+E+E KQKELE + NPI+ K+YQ
Sbjct: 565 KETVDKAVKETIEWLDSNTTAAKDEFEAKQKELESVANPIMAKIYQ 610
Score = 50.0 bits (114), Expect = 4e-07
Identities = 24/33 (72%), Positives = 25/33 (75%)
Frame = -1
Query: 671 VTXDXDANGILNVSAIEKSPNKEXKITITXDKG 573
VT D DANGILNVSA+EK K KITIT DKG
Sbjct: 474 VTFDVDANGILNVSALEKGTGKTQKITITNDKG 506
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 93.9 bits (223), Expect = 3e-20
Identities = 45/107 (42%), Positives = 70/107 (65%), Gaps = 2/107 (1%)
Frame = -2
Query: 577 KVXFSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTM-EDEKLKEKISDS 401
K S+E+IERMV EAE++ ED KE I+A+N LE+Y +S+K +DE+L K+
Sbjct: 535 KGRLSEEDIERMVKEAEEFAEEDKILKERIEARNTLENYAYSLKGQFDDDEQLGGKVDPE 594
Query: 400 DKQTILDKCNDTIKWLD-SNQLADKEEYEHKQKELEGIYNPIITKMY 263
DKQ +LD D +WL+ + A KEE+E ++++L+ + +PI K+Y
Sbjct: 595 DKQAVLDAVEDVAEWLEIHGEDASKEEFEDQRQKLDAVVHPITQKLY 641
Score = 36.7 bits (81), Expect = 0.004
Identities = 18/34 (52%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = -1
Query: 671 VTXDXDANGILNVSAIEKS-PNKEXKITITXDKG 573
VT + DANG+L VSA++KS K K+ I DKG
Sbjct: 503 VTFEVDANGVLTVSAVDKSGKGKPEKLVIKNDKG 536
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 45.2 bits (102), Expect = 1e-05
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Frame = -2
Query: 556 EIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTME--DEKLKEKISDSDKQTIL 383
EIE MV +AEKYR D +KE I+ N ES C ++S ++ +KL ++ + + I
Sbjct: 554 EIEAMVADAEKYRASDMARKEAIENGNRAESVCTDIESNLDIHKDKLDQQAVEDLRSKIT 613
Query: 382 DKCNDTIKWLDSNQLADKEEYEHKQKELEGIYNPIITKMYQ 260
D K ++ E+ + K E++ + + +Y+
Sbjct: 614 DLRETVAKVNAGDEGITSEDMKKKIDEIQQLSLKVFESVYK 654
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = -1
Query: 671 VTXDXDANGILNVSAIEKSPNKEXKITITXDKG 573
V+ D DA+GI+NVSA +K+ NK+ IT+ G
Sbjct: 517 VSFDVDADGIINVSARDKATNKDSSITVAGSSG 549
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 33.1 bits (72), Expect = 0.051
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Frame = -2
Query: 574 VXFSKEEIERMVNEAEKYRNEDD-KQKETIQAKNALESYCFS-----MKSTMEDEKLKEK 413
V ++ E +NE +K+ +E+D T +N S S + +E + K
Sbjct: 213 VYYTLENDSENINEVKKFEDEEDTSTPNTSSFQNNSSSLDLSDNLSYLLQYLEGNRSKIN 272
Query: 412 ISDSD-KQTILDKCNDTIKWLDSNQLADKEEYEHKQK 305
+D+D KQ + D + KW + ++ +E YE +K
Sbjct: 273 ATDADVKQLLSDVKKNKSKWANDQRIGQEELYEAAEK 309
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 33.1 bits (72), Expect = 0.051
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -1
Query: 668 TXDXDANGILNVSAIEKSPNKEXKITITXDKG 573
T + DANGIL V+A+EK+ + I IT G
Sbjct: 480 TFELDANGILKVTAVEKTTGRSAHIEITNSVG 511
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 32.3 bits (70), Expect = 0.089
Identities = 15/61 (24%), Positives = 35/61 (57%)
Frame = -2
Query: 559 EEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILD 380
EE++ +NEA+K NE ++ I+ +L+ +++ +++ + + S KQT+++
Sbjct: 19 EELDAKINEAKKRFNEHKEKLGAIRGGGSLQEKNAELRAELDNIRNAQAAIRSSKQTLIN 78
Query: 379 K 377
K
Sbjct: 79 K 79
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 32.3 bits (70), Expect = 0.089
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Frame = -2
Query: 556 EIERMVNEAEKYRNEDDKQ-KETIQAKNALESYCFSMKSTMED--EKLKEKISDSDKQTI 386
E+ EAE DK ET+ KNALE Y + ++ ++D + S + +
Sbjct: 554 EVLEKYREAEHQMIATDKLVAETVDRKNALEEYIYDTRAKLDDIYAPFTNEEESSKFKEM 613
Query: 385 LDKCNDTIKWL-DSNQLADKEEYEHKQKELEGIYNPI 278
L K D WL + + K Y K ++L + PI
Sbjct: 614 LTKAED---WLYEEGEDTTKAVYTAKLEDLMRVGGPI 647
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 30.3 bits (65), Expect = 0.36
Identities = 23/90 (25%), Positives = 43/90 (47%)
Frame = -2
Query: 565 SKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTI 386
+KEE+E +NE + E ++Q + ++N ++ +K +E EKLKE ++ D
Sbjct: 1606 TKEELENQLNEKSQRIKELEEQAQKNSSENTHDNIDDMIKQQVE-EKLKENSANFDV--- 1661
Query: 385 LDKCNDTIKWLDSNQLADKEEYEHKQKELE 296
K + + A YE K ++L+
Sbjct: 1662 --KLKKVVAETEFRSKAKISVYEKKTRDLQ 1689
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 29.9 bits (64), Expect = 0.47
Identities = 17/91 (18%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Frame = -2
Query: 574 VXFSKEEIERMVNEAEKYRNEDDKQKETI-QAKNALESYCFSMKSTMEDEKLKEKISDSD 398
+ ++ +++E+M +K ++E+ ++ ETI Q + +E ++S +E+E +KE +
Sbjct: 486 IEYTDQKLEKMGGWMKKLQDENSEKTETIAQLEQIIEELHEELRS-LEEESIKESSATQQ 544
Query: 397 KQTILDKCNDTIKWLDSNQLADKEEYEHKQK 305
+ + + + + D + + K+K
Sbjct: 545 NENQHKRSSRKLLYEDKQAIQEAHTINTKRK 575
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -2
Query: 421 KEKISDSDKQTILD-KCNDTIKWLDSNQLADKEEYEHKQKELE 296
+EKI +++TI D K + + ++ EEY KQKEL+
Sbjct: 427 EEKIDSDEEETIDDAKSEMFVDLSEEEEVRQYEEYRKKQKELQ 469
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.7 bits (61), Expect = 1.1
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = -2
Query: 538 NEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNDTIK 359
N+ E + DDKQ + KN+LE+ M+ + E K D ++ LDK D K
Sbjct: 1272 NKRELPEDSDDKQDTASKDKNSLETIDEKMEDASKIEG-DAKTGDDNEMEDLDKMEDLEK 1330
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 28.3 bits (60), Expect = 1.4
Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = -2
Query: 535 EAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKL-KEKISDSDKQTILDKCNDTIK 359
EAE+ + E ++Q+ Q K E + K E EKL KE+I ++Q ++ + ++
Sbjct: 94 EAERLKREKERQQRE-QEKKLREQEKIAAKKMKELEKLEKERIRLQEQQRRKEERDQKLR 152
Query: 358 WLDSNQLADKEEYEHKQKE 302
+ Q +E+ +K+++
Sbjct: 153 EKEEAQRLRQEQILNKERQ 171
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 27.9 bits (59), Expect = 1.9
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = -2
Query: 550 ERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKC- 374
E ++EK ++ K + KNA ++ M DE+ E S K+ K
Sbjct: 100 EEEEEDSEKPVRKNKKSSKKASPKNAFDALADDMDDLSLDEEESESSEKSKKKKKKSKSK 159
Query: 373 NDTIKWLDSNQLADKEEYEHKQKE 302
+D + LD + E+ + K+K+
Sbjct: 160 DDGSEALDDGDIESSEKDKKKKKK 183
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 27.1 bits (57), Expect = 3.3
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -2
Query: 544 MVNEAEKYRNEDDKQKETIQAKNALESYCFSMKST 440
M+++ RN+ +KQ TI KNA++ Y S+K T
Sbjct: 247 MLSKLVSSRNKPNKQ--TILTKNAIQDYLVSLKIT 279
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 26.6 bits (56), Expect = 4.4
Identities = 21/88 (23%), Positives = 35/88 (39%)
Frame = -2
Query: 541 VNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNDTI 362
+NE + Y + + Q +T + L S C + S L + D + +L C I
Sbjct: 830 INETDNYDDNETTQSDTATSYEQLASVCVNELS--GKNVLFFYFLEDDSEKLLKACQHFI 887
Query: 361 KWLDSNQLADKEEYEHKQKELEGIYNPI 278
DS + ++E K + I N I
Sbjct: 888 CVKDSIKRLGDNKFEDKSLRICTIPNSI 915
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 4.4
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = -2
Query: 514 EDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNDTIKWL 353
E DK ET+ K A+ S+ +++++++ K+S D L+ CN+ + L
Sbjct: 242 ETDKFDETM--KEAILSF-----EDLKEQEIRRKVSSDDVHNYLESCNNHLSML 288
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 26.6 bits (56), Expect = 4.4
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Frame = -2
Query: 514 EDDKQKETIQAKNALE-SYCFSMKSTMEDEKLKEKISDSDKQTILDKCNDTIKWLDSN-- 344
E K+ ET++ KN+ + + ++ E LK +K ++++ IK + N
Sbjct: 503 EVTKELETLRMKNSNDLNEIHDLREENEGLTLKIDSITKEKDRLINELEQRIKSYEVNVS 562
Query: 343 QLADK-EEYEHKQKELEGIYNPII 275
+L +EY +K K+ E YN ++
Sbjct: 563 ELNGTIDEYRNKLKDKEETYNEVM 586
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 26.2 bits (55), Expect = 5.8
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
Frame = -2
Query: 562 KEEIERMVNEAEKYRNEDD---------KQKETIQAKNALESYCFSMKSTMEDEKLKEKI 410
KE ER+ E + NED K+K IQ KN+ + + ST E K+ I
Sbjct: 487 KETPERLCTENQSTENEDQANLKESELPKEKSDIQPKNSRSTIEYIETSTRVYEMPKDTI 546
Query: 409 SDSDKQTILDKCND 368
K +I + +D
Sbjct: 547 PSRFKTSISTEVHD 560
>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 457
Score = 26.2 bits (55), Expect = 5.8
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = -2
Query: 559 EEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQT 389
+EIE M + + + D + + N + CFS +ED K KE +SD K +
Sbjct: 215 KEIEEMKDSNGMFCDADHVPLQGQELCNGILEECFSF---LEDAKTKEGLSDEMKSS 268
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 26.2 bits (55), Expect = 5.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 252 EESPEVCRASRAEHPEPE 199
EE+P AS EHPEP+
Sbjct: 244 EEAPAAAAASENEHPEPK 261
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = -2
Query: 565 SKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKS 443
S+ E +++ E ++ ED+KQ E + K AL+ +C +++
Sbjct: 299 SETEQQQLFFEYKQKLLEDEKQLEKDRRKEALDDFCSLLRN 339
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 25.8 bits (54), Expect = 7.7
Identities = 24/88 (27%), Positives = 38/88 (43%)
Frame = -2
Query: 559 EEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILD 380
E+ + E EK + +A+ A + +E EK KEK D D++
Sbjct: 230 EDTWNNLTEEEKKPYHEGLLAAREKAREARRRRSAQNSAKLEKEKAKEKQKDKDQE---- 285
Query: 379 KCNDTIKWLDSNQLADKEEYEHKQKELE 296
DT+ D NQ+ +E E QKE++
Sbjct: 286 --QDTVS--DKNQI---DEIEKGQKEVD 306
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 25.8 bits (54), Expect = 7.7
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = -2
Query: 511 DDKQKETI-QAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNDTIKWLDSNQLA 335
D ++E I A AL + E+ I +K T+ D+ NDT +WLD +L
Sbjct: 181 DSSREELILSALRALRDTLSKDQELTEENVSISVIGKDEKYTLYDQ-NDTKEWLD--KLG 237
Query: 334 DK 329
DK
Sbjct: 238 DK 239
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.8 bits (54), Expect = 7.7
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = -2
Query: 577 KVXFSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSD 398
K S I V + E+ + D T+Q K +S FS K + E L +KIS+ D
Sbjct: 390 KALQSYRRILDSVIQPERKEGKLDNLINTLQDKK--KSSTFSKK---DREVLLKKISEID 444
Query: 397 KQTILDKC 374
QT ++C
Sbjct: 445 SQTSFEQC 452
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 25.8 bits (54), Expect = 7.7
Identities = 13/61 (21%), Positives = 31/61 (50%)
Frame = -2
Query: 562 KEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTIL 383
+++I + + + E RNE+ ++++ ++ ESY ++ E ++ S K T +
Sbjct: 391 EDDIFKRLKQQEDRRNENYRRRQQRESNQESESYVDNVVIQRSVETQSTEVVTSSKSTSV 450
Query: 382 D 380
D
Sbjct: 451 D 451
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 25.8 bits (54), Expect = 7.7
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = -3
Query: 648 RYPQRFRYREVPQQGXQDHHYXRQRXFFPRKRSSVWLMRQRSTETRMTSKRRPSR 484
R P R +YRE + + H R + + RS + R ++ R T + P R
Sbjct: 320 RDPDRTKYREYHSERRKQHRTDRYSDDYYQGRSYSYKKRSHRSD-RYTERENPDR 373
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,531,354
Number of Sequences: 5004
Number of extensions: 45143
Number of successful extensions: 232
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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