Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_G09
         (785 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032631-11|CAB63341.1|  975|Caenorhabditis elegans Hypothetical...    30   1.6  
AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical...    29   2.9  
Z81041-1|CAB02786.2|  362|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AF003142-3|AAB54188.1|  739|Caenorhabditis elegans Him-three par...    28   8.7  

>AL032631-11|CAB63341.1|  975|Caenorhabditis elegans Hypothetical
           protein Y106G6H.12 protein.
          Length = 975

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 23/67 (34%), Positives = 28/67 (41%)
 Frame = -2

Query: 661 PVPYEVKSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLMKSKCLLTSPT 482
           P PY   +P  +PT    RS I   +K Q  NL   SR+ L+P         K   TSP 
Sbjct: 145 PSPYASSTPKHTPTNQMDRSKISFVIKPQI-NLKNCSRELLSPKSSIFSSSPKPKETSPF 203

Query: 481 RSTRKFK 461
             T   K
Sbjct: 204 YKTTPTK 210


>AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical
           protein F41E6.11 protein.
          Length = 316

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 488 PYPVYKEVQVPLVKEVPYPVKYHVPI 411
           P PV + V VP+  +VP P++  VP+
Sbjct: 149 PQPVIQHVPVPVPVQVPVPIRVPVPV 174


>Z81041-1|CAB02786.2|  362|Caenorhabditis elegans Hypothetical
           protein C27A7.2 protein.
          Length = 362

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = +2

Query: 599 RASLLRPCRACQRGLXFVGHWLVYGHWVGLSHGRGXXXHVYIVGXVDWYFD 751
           R S  +P   C         W ++   V  +H  G   H+Y++  V+ Y+D
Sbjct: 100 RYSAPKPVVICISPQFVAEQWQIFLMHVHTAHRFGAHMHIYVISIVNAYYD 150


>AF003142-3|AAB54188.1|  739|Caenorhabditis elegans Him-three
           paralog protein 3 protein.
          Length = 739

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = -2

Query: 643 KSPLTSPTRSK*RSPIRSPLKCQYQNLTKS----SRKSLTPSKRKCLMKSKCLLTSPTRS 476
           ++P    T ++  SP+ SP+K Q Q   K+    S K  T +  +C  K +  + +P R 
Sbjct: 350 RAPAVPITPTEPASPVESPVKEQPQKAPKAQMRRSSKRTTKNNERCEQKEEEPIVNPKRR 409

Query: 475 TRK 467
           + +
Sbjct: 410 SAR 412


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,013,484
Number of Sequences: 27780
Number of extensions: 242916
Number of successful extensions: 724
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)