Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_G07
(778 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 104 1e-23
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 56 7e-09
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 56 7e-09
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 40 4e-04
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 31 0.24
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|... 27 2.3
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||... 26 5.2
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |... 26 5.2
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|... 26 5.2
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.2
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 104 bits (250), Expect = 1e-23
Identities = 47/55 (85%), Positives = 52/55 (94%)
Frame = -1
Query: 763 NSTAIQELFKRISXQFTAMFRRKAFLHXYTGEGMDEMEFTEAESNMNDLVSEYQQ 599
NST+IQE+F+R+ QF+AMFRRKAFLH YTGEGMDEMEFTEAESNMNDLVSEYQQ
Sbjct: 370 NSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 55.6 bits (128), Expect = 7e-09
Identities = 22/55 (40%), Positives = 38/55 (69%)
Frame = -1
Query: 763 NSTAIQELFKRISXQFTAMFRRKAFLHXYTGEGMDEMEFTEAESNMNDLVSEYQQ 599
N+T+I E + R+ +F M+ ++AF+H Y GEGM+E EF+EA ++ L +Y++
Sbjct: 384 NTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 438
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 55.6 bits (128), Expect = 7e-09
Identities = 22/55 (40%), Positives = 38/55 (69%)
Frame = -1
Query: 763 NSTAIQELFKRISXQFTAMFRRKAFLHXYTGEGMDEMEFTEAESNMNDLVSEYQQ 599
N+T+I E + R+ +F M+ ++AF+H Y GEGM+E EF+EA ++ L +Y++
Sbjct: 380 NTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 434
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 39.9 bits (89), Expect = 4e-04
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Frame = -1
Query: 763 NSTAIQELFKRISXQFTAMFRRKAFLHXYTGEGMDEMEFTEAESNMN---DLVSEYQ 602
N T+I LFKR Q+ + +R AFL Y E + E + E +S+ + DL++EY+
Sbjct: 380 NHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEYE 436
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 30.7 bits (66), Expect = 0.24
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -1
Query: 775 HLHRNSTAIQELFKRISXQFTAMFRRKAFLHXYTGEGMDE 656
H NS+ IQ L K I+ T +R ++ Y+G G+DE
Sbjct: 189 HAAENSSEIQALEKSINTFTTYQYRAPEMINLYSGLGIDE 228
>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
Cut9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 27.5 bits (58), Expect = 2.3
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 596 LLLVLGDKVVHVALSLGELH-LVHALAGVXMQESLAPEHSGKLXRDALEQLLD 751
LLL D VH A++L LH + LA + ESLA + + D L++ L+
Sbjct: 543 LLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595
>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 467
Score = 26.2 bits (55), Expect = 5.2
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 420 SYYINTKSKSIVDLSKGERWKGG 488
SY++ SI+ S G++WK G
Sbjct: 56 SYFVTRNKSSIIAFSIGKKWKPG 78
>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 26.2 bits (55), Expect = 5.2
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Frame = +2
Query: 50 SKTLIDLEKKKLYDIN*L---SLEKANNSSHWLQNEELKLHL 166
SKTL DL+K+KL + N + SL K N S LQ E+L L
Sbjct: 152 SKTLTDLKKRKLVERNKIMYFSLRKGPNFS--LQIEKLNTDL 191
>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
2|||Manual
Length = 317
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2
Query: 447 FCFSYLYSNFNSFRLQHA**NNLGSTR 367
FCF ++ F+SFR Q+A NL S R
Sbjct: 243 FCFLKSFAMFSSFRSQNANLYNLNSIR 269
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 347 VFTFPVFFLDYEGQLWNVYCSKQLPSTTRA 258
+ TFP D + QLWNV L S +++
Sbjct: 72 ILTFPFLDPDSQNQLWNVNFRNLLKSLSKS 101
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,599,273
Number of Sequences: 5004
Number of extensions: 46381
Number of successful extensions: 111
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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