Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_G03
(889 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0658 - 20366559-20367562,20367745-20367937 30 2.8
07_01_0004 + 35300-35533,35617-35732,39044-39287,39451-40578,406... 29 4.9
06_03_0108 - 16732215-16732572,16732623-16732741,16733344-167333... 29 4.9
03_05_0958 - 29200048-29200731 29 4.9
02_05_0040 + 25341418-25341810 29 4.9
12_02_0954 - 24757417-24758214 29 6.5
06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137 29 6.5
10_02_0113 + 5410413-5410471,5411330-5413309,5413535-5413594,541... 28 8.6
07_03_0918 - 22581625-22581687,22581773-22581868,22581980-225822... 28 8.6
>07_03_0658 - 20366559-20367562,20367745-20367937
Length = 398
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/63 (28%), Positives = 25/63 (39%)
Frame = +3
Query: 168 VVVGSRHRMRMILRQHGFGQCVEQRPLVPEVPVKRRLLNPQPFRQFACRQTVYADLVQQV 347
V+ G+ H + M L +HG V + L+P L FRQ + DL V
Sbjct: 251 VIPGTEHALNMRLTEHGLDGHVSIKDLIPLAAANADELLSDAFRQLGLAGVEWNDLFWVV 310
Query: 348 QGG 356
G
Sbjct: 311 HPG 313
>07_01_0004 +
35300-35533,35617-35732,39044-39287,39451-40578,
40657-40833
Length = 632
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 534 YRTSLYKKAGWYRSGIPRALCDIHCAGADSLSLISWW 424
Y+TSL + G ++ G+PR C AG D L W
Sbjct: 285 YQTSLSPRCGAFKDGVPRMSC-AKIAGRDKLKRRGDW 320
>06_03_0108 -
16732215-16732572,16732623-16732741,16733344-16733393,
16734619-16734820
Length = 242
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +3
Query: 603 RLESGGWIGPGVFYGGQNSVDGVSRRSDGS 692
R SGG GP V YGG+ GV R+ D S
Sbjct: 140 RRGSGG-TGPAVDYGGRGDSGGVRRKEDSS 168
>03_05_0958 - 29200048-29200731
Length = 227
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +3
Query: 579 KLLSVPRPRLESGGWIGPGVFYGGQNSVDGVSRRSDG 689
+L+ R R +SGG G G G +S DG S+ SDG
Sbjct: 150 RLIEYVRSRNKSGGGGGGGGVAAGCSSSDGDSKSSDG 186
>02_05_0040 + 25341418-25341810
Length = 130
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +2
Query: 113 RRAAPA*SCGHSRSEMSASRRRLSAPNAYDSPP 211
RRAAP CG S+ S +RR AP S P
Sbjct: 74 RRAAPRRRCGGSKRRCSGPQRRRGAPRRRCSGP 106
>12_02_0954 - 24757417-24758214
Length = 265
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +3
Query: 57 TLERPRPAARAHGAIVLAVGEQRLPEAAG---IPDQK*APVVVGSRH 188
T +RPRP+ A A+ A+ A+G Q+ AP VV S+H
Sbjct: 100 TRKRPRPSRPARAAVAAAIAAAAAASASGSQIAAQQQQAPPVVMSQH 146
>06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137
Length = 542
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -2
Query: 597 AGRITISHRKQL*P-LGLFR*HYRTSLYKKAGWY 499
AG + +SH + P L +FR ++ L+K GWY
Sbjct: 130 AGFLVLSHHAGVPPSLAVFRHFFKLCLFKSNGWY 163
>10_02_0113 +
5410413-5410471,5411330-5413309,5413535-5413594,
5416037-5418047
Length = 1369
Score = 28.3 bits (60), Expect = 8.6
Identities = 20/72 (27%), Positives = 34/72 (47%)
Frame = -3
Query: 548 YLGDTIEQVCTKKQAGTGPEFLEHCVISIVLARILYH**VGGHIMFISDKVSSMTKLQPN 369
YLG K TG EF+ H I +V+ I + + +++F+ K+ S ++
Sbjct: 643 YLGPNCGAQFHAKHLSTGGEFVTHVRILLVVLGIPF---LSSNLVFLMLKLLSSCLIRLR 699
Query: 368 TVIRAALDLLNE 333
+ + AL L NE
Sbjct: 700 SSLARALQLWNE 711
>07_03_0918 - 22581625-22581687,22581773-22581868,22581980-22582268,
22582341-22582477,22582567-22582683,22583277-22583440,
22583542-22583756,22583838-22584004,22584206-22584559,
22584647-22584795,22584907-22585030,22585132-22585371,
22585723-22586140,22586297-22586920,22586999-22587183,
22587302-22587412,22587583-22587789,22587869-22587967,
22588063-22588159,22588296-22588384,22588495-22588548,
22588671-22588793,22588872-22588940,22589020-22589089,
22589202-22589260,22589367-22589570,22590032-22590060,
22590375-22590433,22590513-22590634,22591637-22591830,
22591974-22592088
Length = 1680
Score = 28.3 bits (60), Expect = 8.6
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -3
Query: 482 EHCVISIVLARILYH**VGGHIMFISDKVSSMTKLQPNTVIRAALDLLNEVG 327
+ V+SI L +++ VGGH SD + + ++ + L+LLN VG
Sbjct: 1286 DQTVVSIALGALVHLIEVGGHQFSDSDWETLLKSIRDASYTTQPLELLNSVG 1337
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,711,666
Number of Sequences: 37544
Number of extensions: 610654
Number of successful extensions: 1602
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1601
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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