Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_F24
         (966 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    29   4.2  
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862...    28   9.7  
05_07_0327 - 29275916-29276017,29276101-29276283,29276392-292764...    28   9.7  

>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 14/42 (33%), Positives = 16/42 (38%)
 Frame = -1

Query: 960  PPXPXXPXXXXXISPXTPXXXGFXGXPXPXPPXGRKXXXXXP 835
            PP P  P     + P  P   G  G P P PP G +     P
Sbjct: 1136 PPAPPLPEGIGGVPPPPPVG-GLGGPPAPPPPAGFRGGTPPP 1176


>10_08_0608 +
           19184722-19185224,19185331-19185410,19186048-19186235,
           19187021-19187927,19188015-19188142,19189270-19189356,
           19189422-19189472,19189582-19189668,19189746-19189873,
           19190469-19190608,19190721-19190882,19190964-19192733,
           19192807-19192922,19193077-19193227,19193243-19193371,
           19193598-19194139
          Length = 1722

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = -1

Query: 960 PPXPXXPXXXXXISPXTPXXXGFXGXPXPXPP 865
           PP P  P       P TP   G    P P PP
Sbjct: 30  PPHPPPPPPLEPAPPSTPQLRGEASPPPPPPP 61


>05_07_0327 -
           29275916-29276017,29276101-29276283,29276392-29276453,
           29276590-29276671,29276922-29276987,29277297-29277359,
           29277466-29277570,29277678-29277887,29277988-29278103,
           29278875-29279082
          Length = 398

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 368 RDWLLDCYGHVPLNSYGVGPVNGHFDGNGDWPVDR 472
           +D L+D Y +VP   YG+ P       N D P DR
Sbjct: 67  KDGLMDNYKNVPQFLYGLSPAQIEMFMNDDNPYDR 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,443,777
Number of Sequences: 37544
Number of extensions: 223936
Number of successful extensions: 363
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2799822860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)