Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_F23
         (909 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    27   3.7  
SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr...    27   4.9  
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom...    26   6.4  
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    26   6.4  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    26   8.5  

>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 722  PDRPXHLNARLDHERNREDRSRMSXKLXLSNRHHQN 615
            P +  +LNAR +HE  + DR R +  +  + R   N
Sbjct: 1453 PQQAQNLNARREHESQKSDRWRQNGNVNRNPRVSNN 1488


>SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 169

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 16/70 (22%), Positives = 33/70 (47%)
 Frame = -3

Query: 382 LQKLQKAQSHIEHDKTSVAPQAAAANDTEPDTKTAQRKRKIVTENAEEQNVGRAHKNEHV 203
           L+K Q+A +  +  +TSV  + A+ +D  PD +   +  + + E   +        N+ +
Sbjct: 29  LEKFQEAIAKYKFMETSVVRRVASLDDKIPDIRKTLQSVQFLKERQGDSFTVTYELNDTL 88

Query: 202 PKKIDVAKKE 173
             K +V  K+
Sbjct: 89  NAKAEVEAKD 98


>SPBC1271.09 |||glycerophosphodiester
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 543

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 227 PYILFLCVFGDDFSFPLGRFRIGLGVI 307
           PYIL +C+FG+     + R  IGLG++
Sbjct: 236 PYIL-VCIFGEHHLRIVWRLSIGLGLV 261


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = -2

Query: 716 RPXHLNARLDHERNREDRSRMSXKLXLSNRHHQNYFEVNPEVEAXIPASMMFPEG 552
           RP  L++   ++++ + +S  S  L  S     NY +   + EA    S +F  G
Sbjct: 155 RPLALSSDTSYQKSEKAKSEKSPFLSTSKNSDANYSKTTNQKEAEKAVSQLFEVG 209


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 306 MTPSPIRKRPNGNEKSSPKTQRNK 235
           +TPSP    P G+++S+PK+  +K
Sbjct: 243 VTPSPHSHSPAGHQQSTPKSTLSK 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,427,407
Number of Sequences: 5004
Number of extensions: 41013
Number of successful extensions: 158
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)