Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_F23
(909 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U70844-4|AAB09095.2| 1105|Caenorhabditis elegans Hypothetical pr... 33 0.28
AF039041-2|AAP46270.1| 587|Caenorhabditis elegans Hypothetical ... 32 0.49
U32305-11|AAL50323.1| 663|Caenorhabditis elegans Splicing facto... 30 2.6
U32305-10|AAM75378.1| 749|Caenorhabditis elegans Splicing facto... 30 2.6
U32305-9|AAM75380.1| 751|Caenorhabditis elegans Splicing factor... 30 2.6
U06932-1|AAA64937.1| 749|Caenorhabditis elegans CeSWAP protein. 30 2.6
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 29 3.5
AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical... 29 3.5
AC084155-5|AAK84606.1| 433|Caenorhabditis elegans Hypothetical ... 29 4.6
Z68119-1|CAA92191.1| 523|Caenorhabditis elegans Hypothetical pr... 28 8.0
U46753-2|AAA85760.1| 894|Caenorhabditis elegans Hypothetical pr... 28 8.0
L17337-4|ABM74561.1| 217|Caenorhabditis elegans Hypothetical pr... 28 8.0
AF016443-9|AAC24273.1| 364|Caenorhabditis elegans Hypothetical ... 28 8.0
>U70844-4|AAB09095.2| 1105|Caenorhabditis elegans Hypothetical
protein ZK154.5 protein.
Length = 1105
Score = 33.1 bits (72), Expect = 0.28
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
Frame = -3
Query: 403 ELIEEEVLQKLQKAQSHIEHDKTSVAPQAAAANDTE--PDTKTAQRKRKIVTENAEEQNV 230
E I++E+ + +Q A ++ V P A E + K R +E
Sbjct: 61 EEIKKELGEPIQVATDNVRRSDRQVKPSAKMVLVAECAKEIKFDVRDEDQAYNFDDEPEE 120
Query: 229 GRAHKNEHVPKKIDVAKKEVTAGYQYQNATYD 134
G + N +VP + V K++ Y Y +T D
Sbjct: 121 GTSSSNSYVPTNVKVVKRKTPTMYAYSGSTID 152
>AF039041-2|AAP46270.1| 587|Caenorhabditis elegans Hypothetical
protein W03F8.10 protein.
Length = 587
Score = 32.3 bits (70), Expect = 0.49
Identities = 23/89 (25%), Positives = 40/89 (44%)
Frame = -3
Query: 382 LQKLQKAQSHIEHDKTSVAPQAAAANDTEPDTKTAQRKRKIVTENAEEQNVGRAHKNEHV 203
+QKLQK Q H D + A+ + D + + K + + N+ + E +
Sbjct: 1 MQKLQK-QVHALIDTANNIEDTGVASAYDADFEKMEETLKETKKALSDANISK-EDIEEM 58
Query: 202 PKKIDVAKKEVTAGYQYQNATYDKFYNVT 116
KK+ + KK+V AG + A + N+T
Sbjct: 59 SKKLALLKKQVIAGREKLGAIETRISNIT 87
>U32305-11|AAL50323.1| 663|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
b protein.
Length = 663
Score = 29.9 bits (64), Expect = 2.6
Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 5/126 (3%)
Frame = -2
Query: 524 AEMFVPPYSRYVNYRTLAQEEIAKDIKEMEAKVA-----AISSGKRADRGGGSAEAAKGA 360
A +F+ + + L +EE ++E K A ++S K R EA KGA
Sbjct: 510 ARIFMEKLLQEKKAKKLQEEEERSKLEEETRKKAEKISESLSERKNTGRSDRREEAPKGA 569
Query: 359 VAHXXXXXXXXXXXXXXXXXXXRYENGPTETKNRHRKRRGTKCRAGPQKRTCSEKNRCRE 180
+ E T+ ++R RKR + R+ + R+CS ++R RE
Sbjct: 570 RSLDEIINNRINSLLSESGFEPVEEMKRTD-EDRERKRHRKRSRSRRRSRSCSPRDRSRE 628
Query: 179 KGGHRR 162
R+
Sbjct: 629 HKKSRK 634
>U32305-10|AAM75378.1| 749|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
a protein.
Length = 749
Score = 29.9 bits (64), Expect = 2.6
Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 5/126 (3%)
Frame = -2
Query: 524 AEMFVPPYSRYVNYRTLAQEEIAKDIKEMEAKVA-----AISSGKRADRGGGSAEAAKGA 360
A +F+ + + L +EE ++E K A ++S K R EA KGA
Sbjct: 596 ARIFMEKLLQEKKAKKLQEEEERSKLEEETRKKAEKISESLSERKNTGRSDRREEAPKGA 655
Query: 359 VAHXXXXXXXXXXXXXXXXXXXRYENGPTETKNRHRKRRGTKCRAGPQKRTCSEKNRCRE 180
+ E T+ ++R RKR + R+ + R+CS ++R RE
Sbjct: 656 RSLDEIINNRINSLLSESGFEPVEEMKRTD-EDRERKRHRKRSRSRRRSRSCSPRDRSRE 714
Query: 179 KGGHRR 162
R+
Sbjct: 715 HKKSRK 720
>U32305-9|AAM75380.1| 751|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
d protein.
Length = 751
Score = 29.9 bits (64), Expect = 2.6
Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 5/126 (3%)
Frame = -2
Query: 524 AEMFVPPYSRYVNYRTLAQEEIAKDIKEMEAKVA-----AISSGKRADRGGGSAEAAKGA 360
A +F+ + + L +EE ++E K A ++S K R EA KGA
Sbjct: 598 ARIFMEKLLQEKKAKKLQEEEERSKLEEETRKKAEKISESLSERKNTGRSDRREEAPKGA 657
Query: 359 VAHXXXXXXXXXXXXXXXXXXXRYENGPTETKNRHRKRRGTKCRAGPQKRTCSEKNRCRE 180
+ E T+ ++R RKR + R+ + R+CS ++R RE
Sbjct: 658 RSLDEIINNRINSLLSESGFEPVEEMKRTD-EDRERKRHRKRSRSRRRSRSCSPRDRSRE 716
Query: 179 KGGHRR 162
R+
Sbjct: 717 HKKSRK 722
>U06932-1|AAA64937.1| 749|Caenorhabditis elegans CeSWAP protein.
Length = 749
Score = 29.9 bits (64), Expect = 2.6
Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 5/126 (3%)
Frame = -2
Query: 524 AEMFVPPYSRYVNYRTLAQEEIAKDIKEMEAKVA-----AISSGKRADRGGGSAEAAKGA 360
A +F+ + + L +EE ++E K A ++S K R EA KGA
Sbjct: 596 ARIFMEKLLQEKKAKKLQEEEERSKLEEETRKKAEKISESLSERKNTGRSDRREEAPKGA 655
Query: 359 VAHXXXXXXXXXXXXXXXXXXXRYENGPTETKNRHRKRRGTKCRAGPQKRTCSEKNRCRE 180
+ E T+ ++R RKR + R+ + R+CS ++R RE
Sbjct: 656 RSLDEIINNRINSLLSESGFEPVEEMKRTD-EDRERKRHRKRSRSRRRSRSCSPRDRSRE 714
Query: 179 KGGHRR 162
R+
Sbjct: 715 HKKSRK 720
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 29.5 bits (63), Expect = 3.5
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = -3
Query: 403 ELIEEEVLQKLQKAQSHIEHDKTS-VAPQAAAANDTEP-DTKTAQRKRKIVTENAEEQNV 230
E EEE L L + + K + VAP+A AA + P D K +++K++ E EE V
Sbjct: 108 EADEEEDLDALLASFQEKDGPKVAEVAPEAVAAPEAAPVDDKKSKKKKEKPVEKPEEPAV 167
Query: 229 GRAHKNEHVPKKIDVAKKE 173
E K D K+
Sbjct: 168 EEDSDGEGDEKDQDKKDKK 186
>AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical
protein Y54F10BM.2 protein.
Length = 1173
Score = 29.5 bits (63), Expect = 3.5
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = -3
Query: 403 ELIEEEVLQKLQKAQSHIEHDKTS-VAPQAAAANDTEP-DTKTAQRKRKIVTENAEEQNV 230
E EEE L L + + K + VAP+A AA + P D K +++K++ E EE V
Sbjct: 108 EADEEEDLDALLASFQEKDGPKVAEVAPEAVAAPEAAPVDDKKSKKKKEKPVEKPEEPAV 167
Query: 229 GRAHKNEHVPKKIDVAKKE 173
E K D K+
Sbjct: 168 EEDSDGEGDEKDQDKKDKK 186
>AC084155-5|AAK84606.1| 433|Caenorhabditis elegans Hypothetical
protein Y45G5AM.7 protein.
Length = 433
Score = 29.1 bits (62), Expect = 4.6
Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 1/98 (1%)
Frame = -2
Query: 503 YSRYVNYRTLAQEEIAKDIKEMEAKVAAISSGKRADRGGGSAEAAKGAVAHXXXXXXXXX 324
+S VN++ EE+ + +K+ ++++A + + +G A
Sbjct: 292 FSATVNHQNAVIEELTQTVKQKQSEIAELKDQLEKQESRIKGDLKRGLAADYRQKLGMVS 351
Query: 323 XXXXXXXXXXRYENGPTETKNRHRKR-RGTKCRAGPQK 213
YEN E +RKR +C PQ+
Sbjct: 352 SLDTHPIRTPLYENPFYEWNQENRKRNERAQCPPSPQR 389
>Z68119-1|CAA92191.1| 523|Caenorhabditis elegans Hypothetical
protein T18D3.1 protein.
Length = 523
Score = 28.3 bits (60), Expect = 8.0
Identities = 16/71 (22%), Positives = 36/71 (50%)
Frame = -2
Query: 275 TETKNRHRKRRGTKCRAGPQKRTCSEKNRCREKGGHRRLPIPERDLRQVLQRNQQY*ADK 96
+ + ++H + K R ++R +EK +EK GHR P++ ++ ++ +
Sbjct: 425 SSSSSKHETKEERKARK-EKERERAEKKAKKEKDGHREEEKPKKKDKKHETEEERAERKR 483
Query: 95 GQKVEETKRER 63
+K E+ ++ER
Sbjct: 484 KEKKEKERQER 494
>U46753-2|AAA85760.1| 894|Caenorhabditis elegans Hypothetical
protein C34F11.5 protein.
Length = 894
Score = 28.3 bits (60), Expect = 8.0
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -3
Query: 322 QAAAANDTEPDTKTAQRKRKIVTENAEEQNVGRAHKNEHVPKK 194
+ AAA + E + + ++K K E +E++ +AHK PKK
Sbjct: 833 EEAAAKENEKEIRKTKKKSKDKKEGRKEESKEKAHKKSK-PKK 874
>L17337-4|ABM74561.1| 217|Caenorhabditis elegans Hypothetical
protein ZK686.4 protein.
Length = 217
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -3
Query: 370 QKAQSHIEHDKTSVAPQAAAANDTEPDTKTAQRKRKIVTENAEEQN 233
+K ++ +E V + A D + D KT RKRK T EE++
Sbjct: 146 EKKEAQVEQLLEDVQEEEARMADFKKDKKTDNRKRKRDTRKDEEED 191
>AF016443-9|AAC24273.1| 364|Caenorhabditis elegans Hypothetical
protein C17E7.4 protein.
Length = 364
Score = 28.3 bits (60), Expect = 8.0
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = -2
Query: 236 KCRAGPQKRTCSEKNRCREKGGHRRLPIPERDLRQVLQRNQQY*ADKGQKVEETKRER 63
K R QK SEK R E+ R ER+ Q + N Y Q++E+ K+ER
Sbjct: 147 KSRYYMQKWENSEKQRREERRKQERYE-QERESIQSVMSNMAYCMASAQQLEQLKKER 203
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,122,601
Number of Sequences: 27780
Number of extensions: 254485
Number of successful extensions: 1224
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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