Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_F21
         (823 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   1.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.8  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    27   4.3  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    27   4.3  
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    26   7.4  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 123 APASPHATPDDVTPNTALAQPASLSCRIKGPPLSPSQVSCGVSRSP 260
           A A+P + P   TP + L  P S   R   PP SP+      S++P
Sbjct: 120 ASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAP 165



 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 120 PAPASPHATPDDVTP-NTALAQPASLSCRIKGPPLSPS 230
           P+PAS    P    P  ++L  PA  +  +K PP +PS
Sbjct: 152 PSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPS 189


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 22/62 (35%), Positives = 33/62 (53%)
 Frame = +3

Query: 120  PAPASPHATPDDVTPNTALAQPASLSCRIKGPPLSPSQVSCGVSRSPXAHLRAVVEPVEQ 299
            P PA+P + P  +  +  L+ P S   +   PP +P  +S  VS SP A L A V PV +
Sbjct: 961  PRPAAPPSIPPPLPVSNILSSPTSEPPK-DHPPSAP--LSKPVSTSPAAPL-ARVPPVPK 1016

Query: 300  VA 305
            ++
Sbjct: 1017 LS 1018


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = -3

Query: 497 IIFNVNVVPACLYSGVNSKRIDPTRALALGWGYLGPRERLADVLQKV 357
           +IF VN +P  +  G+ ++ +       L  GY+ P + LA+++ K+
Sbjct: 568 LIFIVNFIPQGVLEGITNQHVGLNIITELIGGYILPGKPLANLMIKL 614


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 120 PAPASPHATPDDVTPNTALAQPASLSCRIKGPPLSP 227
           P P+SP  TP+ ++ + +L+  AS     +  P  P
Sbjct: 277 PTPSSPTGTPNSMSKSPSLSSLASTGASYRPGPSKP 312


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 181 SLPRSRAGSRDRRCHPRKCRAVCR 252
           SL R    S D+ C P+KCR  CR
Sbjct: 4   SLTRIAIVSEDK-CRPKKCRQECR 26


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,634,104
Number of Sequences: 5004
Number of extensions: 46505
Number of successful extensions: 149
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)