Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_F20
(809 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 146 3e-36
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 66 4e-12
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 63 4e-11
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 63 4e-11
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 50 3e-07
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 40 6e-04
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 38 0.002
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 37 0.004
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 35 0.016
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 146 bits (354), Expect = 3e-36
Identities = 66/76 (86%), Positives = 70/76 (92%)
Frame = -3
Query: 597 SGGTTMYPGIADRMQKEITAXAPSTMKIKIIAPPERKYSVWIGGSILASLFTFQQMWXSK 418
SGGTTMYPGIADRMQKEI A APS+MK+KI+APPERKYSVWIGGSILASL TFQQMW SK
Sbjct: 300 SGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISK 359
Query: 417 QEYDEXGPSIVHRKCF 370
QEYDE GP IV+RKCF
Sbjct: 360 QEYDESGPGIVYRKCF 375
Score = 39.9 bits (89), Expect = 4e-04
Identities = 22/45 (48%), Positives = 23/45 (51%)
Frame = -2
Query: 724 PEXFFXPXFWVWKLAASTEXTNXSIMKCDVDIRKXLYAXTVFFRG 590
PE F P + A E T SIMKCDVDIRK LY V G
Sbjct: 258 PEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGG 302
Score = 33.9 bits (74), Expect = 0.027
Identities = 17/41 (41%), Positives = 18/41 (43%)
Frame = -1
Query: 794 SLXNFXEFPDGXVIXXGKXGXXXPRGFFPXXFLGMEACGIH 672
SL E PDG VI G P F LG+E GIH
Sbjct: 235 SLEKSYELPDGQVITIGNERFRAPEALFQPSALGLENAGIH 275
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 66.5 bits (155), Expect = 4e-12
Identities = 33/80 (41%), Positives = 53/80 (66%), Gaps = 6/80 (7%)
Frame = -3
Query: 594 GGTTMYPGIADRMQKEITAXAPSTMKIKIIAPP---ERKYSVWIGGSILASLFTFQQMWX 424
GGT++ G + R+Q E++ P + ++KI A ER Y+ W+GGSIL+SL TF Q+W
Sbjct: 354 GGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSLGTFHQLWI 412
Query: 423 SKQEYDEXGP---SIVHRKC 373
S+QEY+E G +++ ++C
Sbjct: 413 SRQEYEEHGSDRLALIEKRC 432
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 63.3 bits (147), Expect = 4e-11
Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Frame = -3
Query: 597 SGGTTMYPGIADRMQKEITAXAP-STMKIKIIAPPER-KYSVWIGGSILASLFTFQQMWX 424
+GGT++ PG+++R+Q E+ A S + + +VW GGSILASL FQ +W
Sbjct: 350 TGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQHLWV 409
Query: 423 SKQEYDEXG 397
SKQEYDE G
Sbjct: 410 SKQEYDEVG 418
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 63.3 bits (147), Expect = 4e-11
Identities = 29/76 (38%), Positives = 49/76 (64%)
Frame = -3
Query: 597 SGGTTMYPGIADRMQKEITAXAPSTMKIKIIAPPERKYSVWIGGSILASLFTFQQMWXSK 418
SGG+T+ G +R E+ A + ++KI A PER ++ W+GGSILASL TF+++ +
Sbjct: 305 SGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITS 364
Query: 417 QEYDEXGPSIVHRKCF 370
+EY + +++ R+ F
Sbjct: 365 EEY-KNDQNVIFRRRF 379
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 50.4 bits (115), Expect = 3e-07
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 13/80 (16%)
Frame = -3
Query: 597 SGGTTMYPGIADRMQKEIT------------AXAPSTMKIKIIAPPERKYSVWIGGSILA 454
SGG++MY G+ R++KEI A P+ K+KI P R+++V+IGG++LA
Sbjct: 300 SGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPN-FKVKIEDAPRRRHAVFIGGAVLA 358
Query: 453 SLFT-FQQMWXSKQEYDEXG 397
+ MW SK E++E G
Sbjct: 359 DIMAQNDHMWVSKAEWEEYG 378
Score = 26.6 bits (56), Expect = 4.2
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = -2
Query: 724 PEXFFXPXFWVWKLAASTEXTNXSIMKCDVDIRKXLYAXTVFFRG 590
PE F P + +E +I DVDIRK LY V G
Sbjct: 258 PECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGG 302
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 39.5 bits (88), Expect = 6e-04
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 14/87 (16%)
Frame = -3
Query: 597 SGGTTMYPGIADRMQK-------------EITAXAPST-MKIKIIAPPERKYSVWIGGSI 460
SGG+T++ +R+Q+ E+ + A S + + +I+ ++ +VW GGS+
Sbjct: 333 SGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSL 392
Query: 459 LASLFTFQQMWXSKQEYDEXGPSIVHR 379
LA F +K +Y+E G SI R
Sbjct: 393 LAQTPEFGSYCHTKADYEEYGASIARR 419
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 37.5 bits (83), Expect = 0.002
Identities = 20/73 (27%), Positives = 35/73 (47%)
Frame = -3
Query: 594 GGTTMYPGIADRMQKEITAXAPSTMKIKIIAPPERKYSVWIGGSILASLFTFQQMWXSKQ 415
GG +PG R+ E+ + AP+ ++K+ P + W S + L + ++
Sbjct: 327 GGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRS 385
Query: 414 EYDEXGPSIVHRK 376
EY E G +I+ RK
Sbjct: 386 EYSEHGANIMTRK 398
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 36.7 bits (81), Expect = 0.004
Identities = 18/71 (25%), Positives = 32/71 (45%)
Frame = -3
Query: 597 SGGTTMYPGIADRMQKEITAXAPSTMKIKIIAPPERKYSVWIGGSILASLFTFQQMWXSK 418
+GG PG+ R+++E+T+ P I + W G S + F+ ++
Sbjct: 641 TGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTR 700
Query: 417 QEYDEXGPSIV 385
+EY E GP +
Sbjct: 701 EEYLEKGPEYI 711
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 34.7 bits (76), Expect = 0.016
Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Frame = -3
Query: 594 GGTTMYPGIADRMQKEITAXAPSTMKIKIIAPP---ERKYSVWIGGSILASLFTFQQMWX 424
GG +PG A +++ I + + I +I PP + ++ W G I + ++W
Sbjct: 537 GGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRIRIVSELWI 596
Query: 423 SKQEYDEXGPSIVHRK 376
++ G ++ K
Sbjct: 597 KNSDWKMLGSRVLQYK 612
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,154,415
Number of Sequences: 5004
Number of extensions: 36506
Number of successful extensions: 101
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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