Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_F19
         (1012 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.34 
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    27   5.5  
SPBC3B9.21 |dcp1||mRNA decapping complex subunit Dcp1|Schizosacc...    26   7.3  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.34
 Identities = 14/49 (28%), Positives = 16/49 (32%)
 Frame = +3

Query: 441 PPPPPXXXXPSXXSXXVPXXAQXXXXXXAPXPPIRXXXXGXSPXXXXPP 587
           PPPPP    P+     +P           P PP      G  P    PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPAC13G6.06c |||glycine cleavage complex subunit
            P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +3

Query: 36   LVRVFFFLKQNSRKNVLIYFNKNLTNYYLFTLTIREVMCTILLIVLEISRCLENY 200
            L+   +  K+ S    L+Y NKN    + F L  RE   T  +   +I++ L++Y
Sbjct: 846  LLNANYMAKRLSSHYKLVYTNKNNLCAHEFILDAREFKATAGVDATDIAKRLQDY 900


>SPBC3B9.21 |dcp1||mRNA decapping complex subunit
           Dcp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 122 IYTHNSRSNVYNFINSTRNISLFGKLLIXK 211
           I   NS  N+Y FIN   N+ L  + LI +
Sbjct: 68  ILNRNSPENLYLFINHPSNVHLVDRYLIHR 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,888,451
Number of Sequences: 5004
Number of extensions: 22558
Number of successful extensions: 50
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 525259918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)