Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_F19
         (1012 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504...    36   0.039
01_01_0715 - 5542648-5543219,5543352-5543544                           31   1.5  
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    30   2.6  
11_06_0610 - 25449085-25453284                                         30   3.4  
12_02_1174 - 26696869-26698191                                         29   7.8  

>07_01_0674 +
           5047503-5047646,5047808-5047901,5048743-5048828,
           5049380-5049429,5049517-5049586,5049668-5049749,
           5049867-5050267,5050414-5050941,5051823-5052044
          Length = 558

 Score = 36.3 bits (80), Expect = 0.039
 Identities = 17/61 (27%), Positives = 21/61 (34%)
 Frame = +3

Query: 441 PPPPPXXXXPSXXSXXVPXXAQXXXXXXAPXPPIRXXXXGXSPXXXXPPXXXXPXSXPTR 620
           PPPPP    P+      P  A        P PP +      +P    PP    P   P R
Sbjct: 204 PPPPPPPPLPASSEPVDPSAASLPPLPPPPPPPPKPANIAGAPGLPLPPPPPPPPGPPPR 263

Query: 621 Q 623
           +
Sbjct: 264 E 264


>01_01_0715 - 5542648-5543219,5543352-5543544
          Length = 254

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 16/59 (27%), Positives = 20/59 (33%)
 Frame = +3

Query: 441 PPPPPXXXXPSXXSXXVPXXAQXXXXXXAPXPPIRXXXXGXSPXXXXPPXXXXPXSXPT 617
           PPPP     P+      P  A       AP PP+       SP    PP      + P+
Sbjct: 146 PPPPTVPAAPTPRPSPPPPAAGTNGTARAPSPPVPAPAPAGSPPPPPPPPAGGNFTAPS 204


>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 24/101 (23%), Positives = 27/101 (26%), Gaps = 3/101 (2%)
 Frame = +3

Query: 441 PPP---PPXXXXPSXXSXXVPXXAQXXXXXXAPXPPIRXXXXGXSPXXXXPPXXXXPXSX 611
           PPP   PP    P       P           P PP +            PP    P   
Sbjct: 42  PPPQGAPPPFLAPPPPPPPGPPPPHQPQFNFGPGPPQQQQPPPPPQMYYQPPPPPPPYGV 101

Query: 612 PTRQXPXSPDRXXTIXXSTXXSXXXPLQGSPXSEXQXAXPP 734
            + Q P  P    +   S       P    P  E Q A PP
Sbjct: 102 NSSQPPPPPPPPPSPPPSAPPPPPPPPTQPPPREAQLAPPP 142


>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 25/105 (23%), Positives = 29/105 (27%), Gaps = 4/105 (3%)
 Frame = +3

Query: 444  PPPPXXXXPSXXSXXVPXXAQXXXXXXAPXPPIRXXXXGXSPXXXXPPXXXXPXSXPT-R 620
            PP P    PS      P             PP         P    PP      S PT  
Sbjct: 760  PPTPEEYTPSPPKSSPPEEKSPPPHSPEKSPPSEAHPTSPPPSEKSPPTPAEESSPPTPE 819

Query: 621  QXPXSPDRXXTIXXSTXXSXXXPLQ---GSPXSEXQXAXPPXAXI 746
            + P  P        S   S   P +    SP  E   + PP A +
Sbjct: 820  KSPSPPSGHEGTPPSPVKSSSPPPEAHVSSPPPEKSSSPPPEAHV 864



 Score = 29.1 bits (62), Expect = 5.9
 Identities = 21/98 (21%), Positives = 27/98 (27%)
 Frame = +3

Query: 441 PPPPPXXXXPSXXSXXVPXXAQXXXXXXAPXPPIRXXXXGXSPXXXXPPXXXXPXSXPTR 620
           PPP P    PS      P             PP        SP    PP    P +  ++
Sbjct: 565 PPPVPEGHTPSPPKSGPPAGESPPTPESKASPPPTPEEYTPSPPKSTPPAEKSPPTPESK 624

Query: 621 QXPXSPDRXXTIXXSTXXSXXXPLQGSPXSEXQXAXPP 734
                P        S   S     +  P  E + + PP
Sbjct: 625 ASSPPPPAPEGHTPSPPESTPPSEKSPPTPESKASSPP 662


>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 22/98 (22%), Positives = 25/98 (25%)
 Frame = +3

Query: 441 PPPPPXXXXPSXXSXXVPXXAQXXXXXXAPXPPIRXXXXGXSPXXXXPPXXXXPXSXPTR 620
           PPPP             P   Q       P PP         P    P     P   P+ 
Sbjct: 126 PPPPRTRTRVEPPHRPPPVKPQPPPSLPPPPPPPPPPPPPRPPSVKPPVVQPKPQPPPSL 185

Query: 621 QXPXSPDRXXTIXXSTXXSXXXPLQGSPXSEXQXAXPP 734
           Q P  P    T   S       P    P +    + PP
Sbjct: 186 QPPSPPPPPPTRPPSVKPPVVQPKPQPPPTLPPPSPPP 223


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,132,142
Number of Sequences: 37544
Number of extensions: 212018
Number of successful extensions: 755
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2975543960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)