Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_F19
         (1012 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025463-3|AAB71009.2|  403|Caenorhabditis elegans Hypothetical ...    30   2.3  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    29   4.0  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    29   4.0  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    29   4.0  
U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    29   7.0  

>AF025463-3|AAB71009.2|  403|Caenorhabditis elegans Hypothetical
           protein K10B4.4 protein.
          Length = 403

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +3

Query: 102 NLTNYYLFTLTIREVMCTILLIVLEISRCLE 194
           N TNYYLF+L + +++  IL + +E  + L+
Sbjct: 64  NPTNYYLFSLAVSDIIALILGLPMEFYQSLD 94


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 20/67 (29%), Positives = 22/67 (32%), Gaps = 4/67 (5%)
 Frame = +3

Query: 441 PPPPPXXXXPSXXSXXVP--XXAQXXXXXXAPXPPIRXXXXG--XSPXXXXPPXXXXPXS 608
           PPPPP    P   S   P    +       +P PP R        SP    PP    P  
Sbjct: 298 PPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTG 357

Query: 609 XPTRQXP 629
            P R  P
Sbjct: 358 RPPRGGP 364


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 20/67 (29%), Positives = 22/67 (32%), Gaps = 4/67 (5%)
 Frame = +3

Query: 441 PPPPPXXXXPSXXSXXVP--XXAQXXXXXXAPXPPIRXXXXG--XSPXXXXPPXXXXPXS 608
           PPPPP    P   S   P    +       +P PP R        SP    PP    P  
Sbjct: 319 PPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTG 378

Query: 609 XPTRQXP 629
            P R  P
Sbjct: 379 RPPRGGP 385


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 20/67 (29%), Positives = 22/67 (32%), Gaps = 4/67 (5%)
 Frame = +3

Query: 441 PPPPPXXXXPSXXSXXVP--XXAQXXXXXXAPXPPIRXXXXG--XSPXXXXPPXXXXPXS 608
           PPPPP    P   S   P    +       +P PP R        SP    PP    P  
Sbjct: 304 PPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTG 363

Query: 609 XPTRQXP 629
            P R  P
Sbjct: 364 RPPRGGP 370


>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 15/66 (22%), Positives = 20/66 (30%)
 Frame = +3

Query: 441 PPPPPXXXXPSXXSXXVPXXAQXXXXXXAPXPPIRXXXXGXSPXXXXPPXXXXPXSXPTR 620
           PPPP      +  +   P          AP PP+        P    PP      + P  
Sbjct: 51  PPPPAPYPQQAVPAPAPPPAPYPQHAVPAPAPPLASYPQNAVPVPAPPPAPYPQHAVPAP 110

Query: 621 QXPXSP 638
             P +P
Sbjct: 111 APPPAP 116



 Score = 28.3 bits (60), Expect = 9.2
 Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
 Frame = +3

Query: 858 PAPXXQX-YXXXARXXXXPAPXXPPPYHXKDXP*XPPQALXPH 983
           PAP  Q      A     P P  PPP++    P  PP    PH
Sbjct: 114 PAPYPQHAVPAPAPYQQQPPPPPPPPHYPPPPPHYPPPPPAPH 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,919,219
Number of Sequences: 27780
Number of extensions: 151051
Number of successful extensions: 464
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2657408452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)