Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_F18
         (812 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    24   1.7  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    24   1.7  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    22   6.7  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = -2

Query: 445 GGHGGATSTQYGPPGHVAGPLH*KKNSLLSFGGSTKYLFISELKP 311
           GG  GA   Q GPP H   P+  + N      G+T     S L P
Sbjct: 191 GGQQGANMHQQGPP-HQQPPIQQQPNQGQQPPGNTAAALPSPLYP 234


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = -2

Query: 445 GGHGGATSTQYGPPGHVAGPLH*KKNSLLSFGGSTKYLFISELKP 311
           GG  GA   Q GPP H   P+  + N      G+T     S L P
Sbjct: 193 GGQQGANMHQQGPP-HQQPPIQQQPNQGQQPPGNTAAALPSPLYP 236


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 714 PXSLKPELLHQYQPKGSGVLWRXLA*LGETRRRTWR 607
           P S++P     + PKG  +LW  L  LG T    +R
Sbjct: 20  PVSVEPT---GFSPKGYSLLWILLFTLGVTISGVYR 52


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,624
Number of Sequences: 336
Number of extensions: 3004
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22206566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)