Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_F16
         (793 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1HQB9 Cluster: Nucleosome assembly protein isoform 1; ...    38   0.29 
UniRef50_Q22SS7 Cluster: Putative uncharacterized protein; n=1; ...    36   1.2  

>UniRef50_Q1HQB9 Cluster: Nucleosome assembly protein isoform 1;
           n=7; Coelomata|Rep: Nucleosome assembly protein isoform
           1 - Bombyx mori (Silk moth)
          Length = 395

 Score = 37.9 bits (84), Expect = 0.29
 Identities = 25/62 (40%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -2

Query: 768 SRAVLLYTGE--DSXXXXXXXXXXXXXXMLDGGERRR*AGASETNQEXRQGPAENPAECK 595
           SRAVLLYTGE  +                ++  E    A    T +  + GPAENPAECK
Sbjct: 335 SRAVLLYTGEGLEDDDDDDYEEEEEEECSMEESEDDEPAPRRRTKKPGK-GPAENPAECK 393

Query: 594 QQ 589
           QQ
Sbjct: 394 QQ 395


>UniRef50_Q22SS7 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1107

 Score = 35.9 bits (79), Expect = 1.2
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +3

Query: 393 VQTKLIVITFLFLAKIFWYIHYYCYHQSTKLLRNSFLKREN 515
           +++ ++   +L+L+KIFW   YYCYH  T  L N +   +N
Sbjct: 348 IKSHMLSQYYLYLSKIFWNSKYYCYH--TYFLYNHYFIHKN 386


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 639,659,288
Number of Sequences: 1657284
Number of extensions: 11034772
Number of successful extensions: 22970
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22960
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 67496806780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)