Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_F16
         (793 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0553 - 18720436-18720494,18721102-18721106,18721136-187212...    30   2.4  
08_02_0823 + 21557111-21557292,21557391-21557473,21557722-215578...    28   7.4  

>10_08_0553 -
           18720436-18720494,18721102-18721106,18721136-18721257,
           18721390-18721478,18722136-18722316,18722403-18722654,
           18722755-18722993,18723680-18723914,18724072-18724132,
           18724632-18724987
          Length = 532

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
 Frame = +3

Query: 363 MCCTS--SDGCKVQTKLIVITFLFLAKIFWYIHYYCYHQSTKLLRNSFLKRENRKISTRI 536
           + CT   + G  +Q   +VI F F      Y+H  CY     L  N   K  N KI +R+
Sbjct: 438 LVCTDLFTRGIDIQAVNVVINFDFPKTSETYLHRICYTYGFCLFTN---KNFNTKIKSRV 494

Query: 537 IVV*SSGKLEL 569
               S G L L
Sbjct: 495 ASCMSDGDLPL 505


>08_02_0823 +
           21557111-21557292,21557391-21557473,21557722-21557810,
           21557985-21558058,21558264-21558314,21558406-21558482,
           21560206-21560900
          Length = 416

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 653 PRRRTKXPGKDLPRTPLSANSSSYLIVMQFEFTG 552
           PRRR K P +  PR   S  SS++  V +  +TG
Sbjct: 33  PRRRQKRPRRSAPRDCPSQRSSAFRGVTRHRWTG 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,110,560
Number of Sequences: 37544
Number of extensions: 296434
Number of successful extensions: 558
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)