Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_F13
(760 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 209 4e-55
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 103 4e-23
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 93 4e-20
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 93 4e-20
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 83 4e-17
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 58 1e-09
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 53 5e-08
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 51 2e-07
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 44 3e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 6.7
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 25 8.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 209 bits (510), Expect = 4e-55
Identities = 98/118 (83%), Positives = 103/118 (87%), Gaps = 1/118 (0%)
Frame = -2
Query: 684 PEALXNPRXW-YEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEI 508
PEAL P E GIHE TYNSIMKCDVDIRKDLY N V+SGGTTMYPGIADRMQKEI
Sbjct: 258 PEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEI 317
Query: 507 TALAPSTMKIKIIAPPERKYSVWIGGPILASLSTFQQMWISKQEYDESGPSIVHRKCF 334
ALAPS+MK+KI+APPERKYSVWIGG ILASLSTFQQMWISKQEYDESGP IV+RKCF
Sbjct: 318 QALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375
Score = 27.9 bits (59), Expect = 1.7
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -1
Query: 727 PDGQVITIGTKN-SVPRGSXQPSXL 656
PDGQVITIG + P QPS L
Sbjct: 243 PDGQVITIGNERFRAPEALFQPSAL 267
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 103 bits (246), Expect = 4e-23
Identities = 49/118 (41%), Positives = 77/118 (65%), Gaps = 1/118 (0%)
Frame = -2
Query: 684 PEALXNPRXW-YEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEI 508
PE L NP EA G+H + SI+ D+D+R LY+N VLSGG+T+ G +R E+
Sbjct: 263 PEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISEL 322
Query: 507 TALAPSTMKIKIIAPPERKYSVWIGGPILASLSTFQQMWISKQEYDESGPSIVHRKCF 334
A++ ++KI A PER ++ W+GG ILASLSTF+++ I+ +EY ++ +++ R+ F
Sbjct: 323 RAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 93.1 bits (221), Expect = 4e-20
Identities = 43/96 (44%), Positives = 61/96 (63%), Gaps = 2/96 (2%)
Frame = -2
Query: 642 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP-STMKIKII- 469
G+HE Y SI+ CD ++R L N V++GGT++ PG+++R+Q E+ LA S + +
Sbjct: 323 GLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAE 382
Query: 468 APPERKYSVWIGGPILASLSTFQQMWISKQEYDESG 361
+VW GG ILASL FQ +W+SKQEYDE G
Sbjct: 383 TASATSNAVWFGGSILASLDNFQHLWVSKQEYDEVG 418
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 93.1 bits (221), Expect = 4e-20
Identities = 46/108 (42%), Positives = 70/108 (64%), Gaps = 6/108 (5%)
Frame = -2
Query: 642 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 463
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 462 P---ERKYSVWIGGPILASLSTFQQMWISKQEYDESGP---SIVHRKC 337
ER Y+ W+GG IL+SL TF Q+WIS+QEY+E G +++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 83.0 bits (196), Expect = 4e-17
Identities = 52/128 (40%), Positives = 74/128 (57%), Gaps = 13/128 (10%)
Frame = -2
Query: 705 SERKIPCPEALXNPRX-WYEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIA 529
SER CPE L P E G+ E +++I DVDIRK LY VLSGG++MY G+
Sbjct: 252 SER-YECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLP 310
Query: 528 DRMQKEITAL--------APSTM---KIKIIAPPERKYSVWIGGPILAS-LSTFQQMWIS 385
R++KEI L P+ + K+KI P R+++V+IGG +LA ++ MW+S
Sbjct: 311 SRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVS 370
Query: 384 KQEYDESG 361
K E++E G
Sbjct: 371 KAEWEEYG 378
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 58.0 bits (134), Expect = 1e-09
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 14/111 (12%)
Frame = -2
Query: 633 ETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPST----------- 487
E N + +D+RK LY N VLSGG+T++ +R+Q+++ +
Sbjct: 309 ELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAK 368
Query: 486 ---MKIKIIAPPERKYSVWIGGPILASLSTFQQMWISKQEYDESGPSIVHR 343
+ + +I+ ++ +VW GG +LA F +K +Y+E G SI R
Sbjct: 369 SGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 52.8 bits (121), Expect = 5e-08
Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 1/123 (0%)
Frame = -2
Query: 705 SERKIPCPEALXNPRXW-YEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIA 529
S + PE L +P GI E S+ +I+ L N V GG +PG
Sbjct: 277 SNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFH 336
Query: 528 DRMQKEITALAPSTMKIKIIAPPERKYSVWIGGPILASLSTFQQMWISKQEYDESGPSIV 349
R+ E+ +LAP+ ++K+ P + W + L + I++ EY E G +I+
Sbjct: 337 KRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEHGANIM 395
Query: 348 HRK 340
RK
Sbjct: 396 TRK 398
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 51.2 bits (117), Expect = 2e-07
Identities = 26/117 (22%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Frame = -2
Query: 696 KIPCPEALXNPRX-WYEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRM 520
+I PE + +P + GI E + + + ++ ++ L +N +++GG PG+ R+
Sbjct: 595 QIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETRI 654
Query: 519 QKEITALAPSTMKIKIIAPPERKYSVWIGGPILASLSTFQQMWISKQEYDESGPSIV 349
++E+T++ P I + W G + F+ ++++EY E GP +
Sbjct: 655 KRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 43.6 bits (98), Expect = 3e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -2
Query: 588 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGPILA 418
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 417 SLSTFQQMWISKQEYDESGPSIVHRK 340
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = -2
Query: 441 WIGGPILASLSTFQQM---WISKQEYDESGPSIVHRK 340
++GG I+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 516 KEITALAPSTMKIKIIAPPERKYSVWIGGPILASLST 406
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,561,206
Number of Sequences: 5004
Number of extensions: 50343
Number of successful extensions: 135
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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