Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_F11
         (850 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68342-3|CAA92773.1|  751|Caenorhabditis elegans Hypothetical pr...    30   2.4  
U28992-3|AAA68391.1|  233|Caenorhabditis elegans Hypothetical pr...    29   5.5  
Z49911-1|CAA90131.2|  647|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AC024090-1|AAF35424.2|  591|Caenorhabditis elegans Hypothetical ...    28   9.6  

>Z68342-3|CAA92773.1|  751|Caenorhabditis elegans Hypothetical
           protein F38E11.4 protein.
          Length = 751

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = -2

Query: 612 LFENFVTTDGDTLTAKFRAFKFPDTTYVQFKGTVTVCLNEC 490
           L  + V  +G+  + K + F+F  +  V+ K ++ VC+ +C
Sbjct: 705 LLHDPVVKNGEVYSTKMKVFRFDGSRRVRIKCSIDVCVEKC 745


>U28992-3|AAA68391.1|  233|Caenorhabditis elegans Hypothetical
           protein T05C1.3 protein.
          Length = 233

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -3

Query: 443 RRSIENSESNKPYEVALTTFIKVDYANGESREAEDVLNLLKNLK 312
           RR I N+ES+   +++L   +  D+AN  +R  E    LLK L+
Sbjct: 81  RREIANTESDLCKKLSLIVDLVSDFANDANRLYEGADELLKELR 124


>Z49911-1|CAA90131.2|  647|Caenorhabditis elegans Hypothetical
           protein M28.1 protein.
          Length = 647

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 588 DGDTLTAKFRAFKFPDTTYVQFKGTVTVC 502
           DG +       FKFPD + V F+ T+T C
Sbjct: 414 DGMSAQVDAYIFKFPDRSTVDFRCTITFC 442


>AC024090-1|AAF35424.2|  591|Caenorhabditis elegans Hypothetical
           protein C52E2.5 protein.
          Length = 591

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = -3

Query: 392 TTFIKVDYANGESREAEDVLNLLKNLKIANQRL 294
           T+F+K+D+    +  ++D++ LLKN K A + L
Sbjct: 391 TSFLKIDHKADINNLSDDLVQLLKNQKTALKEL 423


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,417,518
Number of Sequences: 27780
Number of extensions: 322075
Number of successful extensions: 833
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)