Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_F10
         (798 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   1.2  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    23   2.1  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    23   2.1  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        23   2.1  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   4.9  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   6.5  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 480 GCDGSYSNTVPVSHNGDRRERIRSSLQSIR 569
           G DGS+  +  VS    RRE IRS++  I+
Sbjct: 257 GRDGSHRFSTMVSSANRRREFIRSAITFIK 286


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 462 FDIAAVGCDGSYSNTVPVSHNG 527
           ++ A  G DG++   V V HNG
Sbjct: 93  YNSADEGFDGTFQTNVVVKHNG 114


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 462 FDIAAVGCDGSYSNTVPVSHNG 527
           ++ A  G DG++   V V HNG
Sbjct: 93  YNSADEGFDGTFQTNVVVKHNG 114


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 490 APIPTLSPFHITVTDVNEYAPVF 558
           APIP +SP ++T T     AP+F
Sbjct: 408 APIPNVSPHYVTPTPPE--APLF 428


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +2

Query: 554 SSVNPRT*RPSTRDAFTMRSFASKPLIRIAL--RDMVTCASTRSLRTGA 694
           S + P       +  +T  +   K  I + L  RD+++CA T S +T A
Sbjct: 163 SGLRPHLLENVKKSGYTKPTAIQKYAIPVILSGRDLMSCAQTGSGKTAA 211


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -1

Query: 408 LRFRLSPLSQKGPLHDVCCLVSGRNRAVPGHG--SEESLRP 292
           L  + SP+S+K     V C ++  ++  PG G  + E + P
Sbjct: 508 LHLKNSPISKKVRPPQVLCYITSWSQKRPGAGKFTPEDINP 548


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,404
Number of Sequences: 336
Number of extensions: 4485
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21687721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)