Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_F10
(798 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0469 - 18064430-18064494,18064621-18064747,18064823-180651... 33 0.26
07_03_1177 - 24574682-24574852,24575047-24575618,24575711-245760... 30 2.5
06_03_0215 - 18080286-18080914,18080925-18080997 29 3.2
04_04_0042 + 22328464-22329858 29 3.2
11_04_0351 + 16666398-16666532,16666911-16667048,16667398-166683... 29 4.3
10_02_0159 + 6020441-6020971 29 4.3
06_01_1105 + 9102059-9102167,9103770-9103907,9104125-9104267,910... 29 4.3
02_02_0637 - 12491706-12492575,12492580-12492657 29 4.3
12_01_0636 + 5363436-5363848,5364041-5364354,5364792-5364817 28 9.9
06_03_0865 - 25516072-25517007 28 9.9
01_06_1796 - 39932487-39932633,39933150-39933201,39933370-399334... 28 9.9
>11_04_0469 -
18064430-18064494,18064621-18064747,18064823-18065120,
18065230-18065380,18067718-18067944,18068033-18068367,
18068452-18068485,18069445-18069500
Length = 430
Score = 33.1 bits (72), Expect = 0.26
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 7/42 (16%)
Frame = +3
Query: 171 VGVFLTAVYGAEGNNNEEI----PYLELDEPDEG---YHGLI 275
VG+ L +YG EGN NEE+ YLE +P+EG Y G++
Sbjct: 232 VGLCLKKMYGPEGNVNEELKDLAAYLEGSKPEEGPVTYDGIL 273
>07_03_1177 -
24574682-24574852,24575047-24575618,24575711-24576068,
24576108-24576152
Length = 381
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 490 APIPTLSPFHITVTDVNEYAPVFSQSAYVKTVDEGRIYDE 609
AP+ T PF+I N P + +AY++ +DEG + E
Sbjct: 45 APLQTSRPFNIAHRGSNGELPEETAAAYMRAIDEGADFIE 84
>06_03_0215 - 18080286-18080914,18080925-18080997
Length = 233
Score = 29.5 bits (63), Expect = 3.2
Identities = 27/89 (30%), Positives = 32/89 (35%), Gaps = 1/89 (1%)
Frame = -1
Query: 429 GIGHGGGLRFRLSPLSQKGPLHDVCCLVSGRNRAVPGH-GSEESLRPGSRSP*SAHDNPH 253
G+ G L SPL G + G +R S E RP S + P
Sbjct: 122 GVSRGPSLSLP-SPLRSLGRRSAAPVVAGGDHRGAGARLPSVEPARPPSAASRGCQVGPG 180
Query: 252 RARPTPDMGFLRCCFPRRRTPPSGKLRRT 166
R P P G PRRR PP+ R T
Sbjct: 181 RQPPAP-AGAADAWDPRRRPPPAACTRST 208
>04_04_0042 + 22328464-22329858
Length = 464
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +1
Query: 454 TTNSILPQLVATAPIPTLSP--FHITVTDVNEYAPVFSQSAYVKTVDEGRIYDEIL 615
TT + A AP PT SP + V D N Y + ++ + T E +YDE++
Sbjct: 300 TTTTATATATAPAPAPTPSPNATAVAVGDANRYGMIIDIASTI-TFLEASLYDELV 354
>11_04_0351 +
16666398-16666532,16666911-16667048,16667398-16668306,
16668383-16668511,16668774-16668996,16669085-16669231,
16669332-16669573,16669660-16669689,16669784-16669865,
16669968-16670128,16670775-16670898,16671206-16671414
Length = 842
Score = 29.1 bits (62), Expect = 4.3
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -1
Query: 588 VDGLHVRGLTEDWSVFVHVCHRYVKRGQCW 499
+ G+ R L W+ ++ C R + RGQ W
Sbjct: 784 ISGITCRRLFTSWTQWMEKCRRVLNRGQMW 813
>10_02_0159 + 6020441-6020971
Length = 176
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 174 GVFLTAVYGAEGNNNEEIPYLELD 245
GVF+T Y GN N E P+L LD
Sbjct: 149 GVFITCNYDPPGNFNGERPFLTLD 172
>06_01_1105 +
9102059-9102167,9103770-9103907,9104125-9104267,
9104362-9104515,9104610-9104839,9105382-9105471,
9105606-9105779,9105873-9106010,9106212-9106349,
9106450-9106511,9106744-9106972,9108531-9109364
Length = 812
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 365 WRGPF*DNGDRRKRSPPPCPI 427
WR P + G RR+RSPPP P+
Sbjct: 775 WRRPVAEPG-RRRRSPPPSPV 794
>02_02_0637 - 12491706-12492575,12492580-12492657
Length = 315
Score = 29.1 bits (62), Expect = 4.3
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 11/70 (15%)
Frame = -1
Query: 315 GSEESLRPGSRSP*SAHDNPHRARPTPDMGFLR-----------CCFPRRRTPPSGKLRR 169
G+E S SR+P S+ +P RA T F C P T PS + R
Sbjct: 101 GTEGSPPTRSRTPRSSRRSPARATSTTHSPFCHSWRTTPWLPTSCSSPTSSTSPSARATR 160
Query: 168 TKRSRTSQSF 139
+RSR+S F
Sbjct: 161 PRRSRSSPVF 170
>12_01_0636 + 5363436-5363848,5364041-5364354,5364792-5364817
Length = 250
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 327 PLCSFLILNNIHHGEAPFEIMVIDEN 404
P+C +L NN APF + V+DE+
Sbjct: 108 PVCRWLTRNNGEGSLAPFTVFVVDED 133
>06_03_0865 - 25516072-25517007
Length = 311
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = -1
Query: 426 IGHGGGLRFRLSPLSQKGPLHDVCCLVSGRNRAVPGHGSEESLRPGSRSP*SAHDNPH 253
+ HGGG P+++ G V C +S R P SL PG+ + HD+ H
Sbjct: 169 LSHGGGFGQIFRPVARTGAFEPVDCAISRRQEEDPFTSLSLSL-PGTDQRFN-HDSAH 224
>01_06_1796 -
39932487-39932633,39933150-39933201,39933370-39933495,
39933645-39933743,39934039-39934258,39934599-39934764,
39935108-39935161,39935527-39935657,39935747-39935818,
39936524-39936602,39936705-39936783,39936868-39936902,
39936986-39937111
Length = 461
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/55 (25%), Positives = 22/55 (40%)
Frame = +2
Query: 281 ERDPGRSDSSDPCPGTALFLPDTKQHTSWRGPF*DNGDRRKRSPPPCPIPAELRE 445
E PG ++ DP G + F + T W P + ++PP +P E
Sbjct: 187 ELPPGWVEAKDPTSGASYFYNQSTGTTQWDRPGAPLNTMQHQAPPSSSLPENWEE 241
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,270,189
Number of Sequences: 37544
Number of extensions: 513727
Number of successful extensions: 1686
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1683
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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