Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_F09
(823 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5MGK5 Cluster: Ribosomal protein 23; n=2; Endopterygot... 190 5e-47
UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96; Eukaryo... 161 3e-38
UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70; Eukaryo... 140 4e-32
UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;... 112 9e-24
UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1; ... 103 5e-21
UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2; Scleroti... 97 4e-19
UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2; Ol... 91 2e-17
UniRef50_Q95YH2 Cluster: Ribosomal protein L4; n=1; Paramecium c... 90 5e-17
UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5; E... 84 5e-15
UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lambli... 82 1e-14
UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL... 82 2e-14
UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1, pu... 80 8e-14
UniRef50_UPI00005A24EF Cluster: PREDICTED: similar to ribosomal ... 77 7e-13
UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n... 77 7e-13
UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal ... 72 2e-11
UniRef50_A7R5H8 Cluster: Chromosome undetermined scaffold_974, w... 71 4e-11
UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1; Encephal... 69 2e-10
UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3; Trich... 63 7e-09
UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia b... 49 1e-04
UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2; Cryptomo... 45 0.002
UniRef50_UPI0000DA3D75 Cluster: PREDICTED: similar to ribosomal ... 44 0.005
UniRef50_Q6M9P8 Cluster: Putative cytochrome-c oxidase fixO chai... 38 0.23
UniRef50_Q54WV7 Cluster: Putative uncharacterized protein; n=1; ... 35 2.8
UniRef50_UPI0000EBC685 Cluster: PREDICTED: similar to Hrnr prote... 34 4.9
UniRef50_Q5CF53 Cluster: Putative uncharacterized protein; n=2; ... 34 4.9
UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1, pu... 34 4.9
UniRef50_Q07U65 Cluster: SNF2-related protein; n=2; Proteobacter... 33 6.5
UniRef50_Q2NFV7 Cluster: 50S ribosomal protein L4P; n=2; Euryarc... 33 6.5
UniRef50_O60293 Cluster: Coiled-coil domain-containing protein 1... 33 6.5
UniRef50_Q673S8 Cluster: Ribosomal protein L4; n=3; cellular org... 33 8.6
>UniRef50_Q5MGK5 Cluster: Ribosomal protein 23; n=2;
Endopterygota|Rep: Ribosomal protein 23 - Lonomia
obliqua (Moth)
Length = 274
Score = 190 bits (462), Expect = 5e-47
Identities = 96/149 (64%), Positives = 113/149 (75%), Gaps = 1/149 (0%)
Frame = -3
Query: 821 KAWXDILXCTSFRXLXC-KGKMRNRXXIQRKGPXHNFQTRXQGLTRAFXQHXPVWSS*ML 645
KAW D+L + L KGKMRNR + RKGP + + QGLTR+F ++ P +
Sbjct: 40 KAWSDVLKVYKSQRLRAGKGKMRNRRRLHRKGPLIIYN-KDQGLTRSF-RNIPGVDMVNV 97
Query: 644 TS*TXLKLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRL 465
L LAPGGH+GRF+IWTQSAF RLD +FGSWKTPSK+KKNFNLPQPKMANTDL+RL
Sbjct: 98 NKLNLLHLAPGGHVGRFMIWTQSAFERLDAIFGSWKTPSKEKKNFNLPQPKMANTDLSRL 157
Query: 464 LKSDEIRKVLRAPNKRVIRATRKLNPLTN 378
LKS+EIR+VLRAP KRV+RATRKLNPLTN
Sbjct: 158 LKSEEIRRVLRAPIKRVVRATRKLNPLTN 186
Score = 77.4 bits (182), Expect = 4e-13
Identities = 38/60 (63%), Positives = 49/60 (81%)
Frame = -1
Query: 373 KAMLKLNPYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERRRKNI 194
KAMLKLNPYAAVLK+KA+L+ +RKN +AL AEK G+KL +PA+KA KL+E+R K+I
Sbjct: 188 KAMLKLNPYAAVLKKKAVLDQVKRKNKRALEVAEKRGIKLPDDDPAVKALKLKEKRAKSI 247
>UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96;
Eukaryota|Rep: 60S ribosomal protein L4 - Drosophila
melanogaster (Fruit fly)
Length = 401
Score = 161 bits (390), Expect = 3e-38
Identities = 84/149 (56%), Positives = 104/149 (69%), Gaps = 1/149 (0%)
Frame = -3
Query: 821 KAWXDILXC-TSFRXLXCKGKMRNRXXIQRKGPXHNFQTRXQGLTRAFXQHXPVWSS*ML 645
K W DI S R +G MR+R I R+GP + + +GL +AF ++ P + +
Sbjct: 178 KIWADIQKVYKSQRFRAGRGTMRDRRRIARRGPLVVYD-KDEGLRKAF-RNIPGIETINV 235
Query: 644 TS*TXLKLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRL 465
LKLAPGGH+GRFVIWT+SAF RL+ LFG+WK PS KK +NLPQPKMANTDL+RL
Sbjct: 236 DKLNLLKLAPGGHVGRFVIWTESAFARLNDLFGTWKKPSTLKKGYNLPQPKMANTDLSRL 295
Query: 464 LKSDEIRKVLRAPNKRVIRATRKLNPLTN 378
LKS+EIRKVLR P KRV R+ R+LNPLTN
Sbjct: 296 LKSEEIRKVLRDPRKRVFRSVRRLNPLTN 324
Score = 47.6 bits (108), Expect = 4e-04
Identities = 25/58 (43%), Positives = 35/58 (60%)
Frame = -1
Query: 373 KAMLKLNPYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERRRK 200
+ ++KLNPYA VLKR+A L +R K LA A+K ++L+K + A A K R K
Sbjct: 326 RQLIKLNPYAEVLKRRAALAAEKRTVAKVLAKAKKQNVELAKSHFANVATKAAANRAK 383
>UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70;
Eukaryota|Rep: 60S ribosomal protein L4 - Homo sapiens
(Human)
Length = 427
Score = 140 bits (339), Expect = 4e-32
Identities = 77/177 (43%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
Frame = -3
Query: 821 KAWXDILXC-TSFRXLXCKGKMRNRXXIQRKGPXHNFQTRXQGLTRAFXQHXPVWSS*ML 645
KAW DI S R KGKMRNR IQR+GP + G+ +AF ++ P + +
Sbjct: 175 KAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYN-EDNGIIKAF-RNIPGITLLNV 232
Query: 644 TS*TXLKLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRL 465
+ LKLAPGGH+GRF IWT+SAF +LD L+G+W+ + K N+NLP KM NTDL+R+
Sbjct: 233 SKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRI 292
Query: 464 LKSDEIRKVLRAPNKRVIRATRKLNPLTNXQGDAETQSLRGRAEEESYLRAAQKEEL 294
LKS EI++ LRAP K++ R K NPL N + + + LR A+ +L
Sbjct: 293 LKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKL 349
>UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;
Ostreococcus tauri|Rep: Ribosomal protein
RPL1/RPL2/RL4L4 - Ostreococcus tauri
Length = 404
Score = 112 bits (270), Expect = 9e-24
Identities = 64/133 (48%), Positives = 82/133 (61%), Gaps = 2/133 (1%)
Frame = -3
Query: 770 KGKMRNRXXIQRKGPXHNFQTRXQGLTRAFXQHXPVWSS*MLTS*TXLKLAPGGHLGRFV 591
KGKMRNR +QR+GP + + G+TRAF ++ P + L LAPGGH+GRF+
Sbjct: 196 KGKMRNRRYVQRRGPLVVY-SEDNGVTRAF-RNIPGVELCSVDRLGLLTLAPGGHVGRFI 253
Query: 590 IWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVI 411
IWT+SAF +LD +FG+ + S KK + P MA TDLTRL+ SDEI+ L AP I
Sbjct: 254 IWTKSAFEKLDSIFGTSTSKSASKKGWKPPTNIMAQTDLTRLINSDEIQSALNAPKLGAI 313
Query: 410 R--ATRKLNPLTN 378
R A K NPL N
Sbjct: 314 RAHAPLKRNPLKN 326
>UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 349
Score = 103 bits (247), Expect = 5e-21
Identities = 62/140 (44%), Positives = 83/140 (59%), Gaps = 7/140 (5%)
Frame = -3
Query: 770 KGKMRNRXXIQRKGPXHNFQTRXQG--LTRAFXQHXPVWSS*MLTS*TXLKLAPGGHLGR 597
KGK+R R QR+GP + G L +AF V +S + S L+LAPGGHLGR
Sbjct: 172 KGKLRGRRHKQRRGPLVIYNPDEDGKELVKAFRNIPGVETS-SVYSMNLLQLAPGGHLGR 230
Query: 596 FVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLR----- 432
F++WT SAFG LD ++GS PS KK+F LP M DL++++ S +I+KVLR
Sbjct: 231 FIVWTSSAFGALDTIYGSTTEPSALKKDFLLPSTMMKQPDLSKIINSSDIQKVLRPVRGG 290
Query: 431 APNKRVIRATRKLNPLTNXQ 372
A +KR + +K NPL N Q
Sbjct: 291 AVSKRGV--VQKKNPLKNFQ 308
>UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2;
Sclerotiniaceae|Rep: 60S ribosomal protein L4 -
Sclerotinia sclerotiorum 1980
Length = 373
Score = 97.5 bits (232), Expect = 4e-19
Identities = 58/138 (42%), Positives = 83/138 (60%), Gaps = 5/138 (3%)
Frame = -3
Query: 770 KGKMRNRXXIQRKGPX--HNFQTRXQGLTRAFXQHXPVWSS*MLTS*TXLKLAPGGHLGR 597
KGK+R R QR+GP ++ T + L RAF ++ P + + S L+LAPGGHLGR
Sbjct: 195 KGKLRGRRHRQRRGPLVVYDGATDGKELVRAF-RNLPGVETCDVYSLNLLQLAPGGHLGR 253
Query: 596 FVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKR 417
F+IW+ SAF LD ++G+ PS KK+F LP ++ D+ RL+ S E++ V+RA
Sbjct: 254 FIIWSSSAFKALDNIYGTTTAPSALKKDFLLPSNVVSQADIGRLINSSELQSVIRAAKGS 313
Query: 416 VI--RA-TRKLNPLTNXQ 372
+ RA +K NPL N Q
Sbjct: 314 ALTKRAGVQKKNPLLNKQ 331
>UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2;
Oligohymenophorea|Rep: Ribosomal protein L4, putative -
Paramecium tetraurelia
Length = 406
Score = 91.5 bits (217), Expect = 2e-17
Identities = 52/130 (40%), Positives = 74/130 (56%), Gaps = 1/130 (0%)
Frame = -3
Query: 764 KMRNRXXIQRKGPXHNFQTRXQGLTRAFXQHXPVWSS*MLTS*TXLKLAPGGHLGRFVIW 585
K R + RKGP + L +AF ++ P +T L+LAPGG LGRFVIW
Sbjct: 196 KQRGKKYRVRKGPLVVYFNENAKLLKAF-RNVPGVEVVNVTRLNLLQLAPGGQLGRFVIW 254
Query: 584 TQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIR-KVLRAPNKRVIR 408
TQSAF LD LFG+++ S K + L +P + N DL R++ S++++ KV A +V+
Sbjct: 255 TQSAFAHLDKLFGTYRYASVLKDGYQLLRPLLTNPDLARIINSNQVQEKVQPAKTTKVLH 314
Query: 407 ATRKLNPLTN 378
+K NPL N
Sbjct: 315 DVQKKNPLKN 324
>UniRef50_Q95YH2 Cluster: Ribosomal protein L4; n=1; Paramecium
caudatum|Rep: Ribosomal protein L4 - Paramecium caudatum
Length = 252
Score = 90.2 bits (214), Expect = 5e-17
Identities = 52/130 (40%), Positives = 73/130 (56%), Gaps = 1/130 (0%)
Frame = -3
Query: 764 KMRNRXXIQRKGPXHNFQTRXQGLTRAFXQHXPVWSS*MLTS*TXLKLAPGGHLGRFVIW 585
K R + RKGP + L +AF ++ P +T L+LAPGG LGRFVIW
Sbjct: 42 KSRGKKYRVRKGPLVVYFNENAKLLKAF-RNVPGVEVVNVTRLNLLQLAPGGQLGRFVIW 100
Query: 584 TQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIR-KVLRAPNKRVIR 408
TQSAF LD LFG+++ S K + L +P + N DL R++ S++++ KV A V+
Sbjct: 101 TQSAFANLDKLFGTYRYSSILKDGYQLLRPLLTNPDLARIINSNQVQEKVQAAKQTTVLH 160
Query: 407 ATRKLNPLTN 378
+K NPL N
Sbjct: 161 EVQKKNPLKN 170
>UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5;
Entamoeba histolytica HM-1:IMSS|Rep: 60S ribosomal
protein L4 - Entamoeba histolytica HM-1:IMSS
Length = 431
Score = 83.8 bits (198), Expect = 5e-15
Identities = 51/149 (34%), Positives = 86/149 (57%), Gaps = 2/149 (1%)
Frame = -3
Query: 818 AWXDILXCTSFRXLXC-KGKMRNRXXIQRKGPXHNFQTRXQGLTRAFXQHXPVWSS*MLT 642
A+ D+L + + + +GKMR R +RKGP + +AF ++ P + +
Sbjct: 177 AYSDVLKVIASKTVRAGQGKMRGRKIKERKGPLVVYGNDDLQAVKAF-RNIPGVDTCRVE 235
Query: 641 S*TXLKLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLL 462
+ + L LAPG H+GRF+IWT+SAF +L+ +FG+ K ++ K F + +MA D+ R++
Sbjct: 236 NLSVLNLAPGCHIGRFIIWTESAFKKLNTIFGTQKKMAQGKSGFRIAHAQMAVPDMKRVV 295
Query: 461 KSDEIRKVLRAPNKRVI-RATRKLNPLTN 378
+ E K+LRA K V+ + ++ NPL N
Sbjct: 296 VAAEKAKLLRA--KIVLPKVPKRANPLKN 322
>UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_79_45017_44067 - Giardia lamblia
ATCC 50803
Length = 316
Score = 82.2 bits (194), Expect = 1e-14
Identities = 49/147 (33%), Positives = 82/147 (55%), Gaps = 1/147 (0%)
Frame = -3
Query: 809 DILXCTSFRXLXC-KGKMRNRXXIQRKGPXHNFQTRXQGLTRAFXQHXPVWSS*MLTS*T 633
D+ C R + +GKMRNR I RKGP + T + + R F ++ P ++S
Sbjct: 167 DVERCKDSRHIRAGRGKMRNRRYITRKGPLVIYNT--EDVARGF-RNLPGVDLCHVSSIR 223
Query: 632 XLKLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSD 453
L+LAPG H GR ++WT+SAF LD ++ + K+N+ LP+ + TD+ R+L+SD
Sbjct: 224 LLELAPGSHPGRLILWTKSAFASLDDVYAA-------KQNYTLPRSCITQTDIERILQSD 276
Query: 452 EIRKVLRAPNKRVIRATRKLNPLTNXQ 372
++K P + + RK++P ++ +
Sbjct: 277 AVQKTF-VPKRDPLVIERKVDPFSSKE 302
>UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL4 -
Streblomastix strix
Length = 492
Score = 81.8 bits (193), Expect = 2e-14
Identities = 48/128 (37%), Positives = 70/128 (54%), Gaps = 3/128 (2%)
Frame = -3
Query: 767 GKMRNRXXIQRKGPXHNFQTRXQGLTRAFXQHXPVWSS*MLTS*TXLKLAPGGHLGRFVI 588
GK RNR QR+G + +GL AF V S + LAPGGHLGRF+I
Sbjct: 194 GKARNRRYTQRRGVLI-VHDQNEGLANAFRNISGVDISNVXRL-NIRDLAPGGHLGRFII 251
Query: 587 WTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRA---PNKR 417
WT+ A+ +LD L+G+ + K + P P + NTDL+R++ S ++ VL+A +K+
Sbjct: 252 WTEGAYKKLDKLYGTRFRTALLKNEYKHPTPSVTNTDLSRIIHSPTVQSVLKARGKQSKK 311
Query: 416 VIRATRKL 393
+I R L
Sbjct: 312 IINVRRNL 319
>UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L4/L1, putative - Plasmodium chabaudi
Length = 411
Score = 79.8 bits (188), Expect = 8e-14
Identities = 46/130 (35%), Positives = 70/130 (53%)
Frame = -3
Query: 767 GKMRNRXXIQRKGPXHNFQTRXQGLTRAFXQHXPVWSS*MLTS*TXLKLAPGGHLGRFVI 588
GKMRNR GP + + G+ +AF ++ P +T LKLAPGG +GR I
Sbjct: 194 GKMRNRKYKISNGPLIIY-SXDSGIKKAF-RNIPGVDLCNVTKLNLLKLAPGGSIGRLCI 251
Query: 587 WTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIR 408
W++ AF +LD ++G KKN+ LP+P + N D+ R++ SD+++ L +
Sbjct: 252 WSEDAFKKLDVIYGKTFQKYVTKKNYILPKPIVNNADIYRIINSDQVQASLLDKKSPCKK 311
Query: 407 ATRKLNPLTN 378
T+ N LTN
Sbjct: 312 RTQNKNSLTN 321
>UniRef50_UPI00005A24EF Cluster: PREDICTED: similar to ribosomal
protein L4; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein L4 - Canis familiaris
Length = 253
Score = 76.6 bits (180), Expect = 7e-13
Identities = 34/66 (51%), Positives = 46/66 (69%)
Frame = -3
Query: 575 AFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRK 396
AF +LD L+G+W + K N+NLP KM NTDL+R+LKS EI++ L+AP K++ R K
Sbjct: 95 AFCKLDDLYGTWHKAASLKSNYNLPMHKMLNTDLSRILKSPEIQRALQAPRKKIHRRVLK 154
Query: 395 LNPLTN 378
NPL N
Sbjct: 155 KNPLKN 160
Score = 33.5 bits (73), Expect = 6.5
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = -1
Query: 367 MLKLNPYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEK 221
MLKLNPYA ++R I LR+ KN K D + L+ + +K
Sbjct: 164 MLKLNPYAKTMRRNTI--LRQAKNHKLRMDKSAAALEAKSEEKGVPGKK 210
>UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n=4;
Cryptosporidium|Rep: 60S ribosomal protein-like,
putative - Cryptosporidium parvum Iowa II
Length = 394
Score = 76.6 bits (180), Expect = 7e-13
Identities = 42/113 (37%), Positives = 61/113 (53%)
Frame = -3
Query: 770 KGKMRNRXXIQRKGPXHNFQTRXQGLTRAFXQHXPVWSS*MLTS*TXLKLAPGGHLGRFV 591
KGKMRNR + GP + G+ +A V + + L+LAPGG GR
Sbjct: 196 KGKMRNRRRVCAVGPLVVY-AEDNGIVKAMRNIKGV-DTCSVERLNLLRLAPGGTFGRLT 253
Query: 590 IWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLR 432
I+T+ A RL ++GS+ S K + LP+P M N D+TR++ S E++ VLR
Sbjct: 254 IFTKGAIKRLQEIYGSYTHGSSSKVGYTLPRPAMTNADITRIINSTEVQSVLR 306
>UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal
protein L4; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein L4 - Canis familiaris
Length = 248
Score = 71.7 bits (168), Expect = 2e-11
Identities = 34/67 (50%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Frame = -3
Query: 575 AFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRV-IRATR 399
AF +LD L+G+W + K N+NLP KM NTDL+R+LK I++ LRAP KR+ R +
Sbjct: 173 AFCKLDDLYGTWPKAASLKSNYNLPMHKMLNTDLSRILKRPGIQRALRAPRKRIHRRVLK 232
Query: 398 KLNPLTN 378
K NPL N
Sbjct: 233 KKNPLKN 239
>UniRef50_A7R5H8 Cluster: Chromosome undetermined scaffold_974,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_974, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 386
Score = 70.9 bits (166), Expect = 4e-11
Identities = 37/85 (43%), Positives = 53/85 (62%)
Frame = -3
Query: 770 KGKMRNRXXIQRKGPXHNFQTRXQGLTRAFXQHXPVWSS*MLTS*TXLKLAPGGHLGRFV 591
KGKMRNR I RKGP + L +AF ++ P + LKLAPGGHLGRFV
Sbjct: 56 KGKMRNRRYISRKGPLIVYGMEGAKLVKAF-RNIPGVEVANVDRLNLLKLAPGGHLGRFV 114
Query: 590 IWTQSAFGRLDPLFGSWKTPSKQKK 516
IWT+S+F +LD ++ S++ ++++
Sbjct: 115 IWTKSSFEKLDSIYRSFEKKLRRRR 139
>UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L4 -
Encephalitozoon cuniculi
Length = 335
Score = 68.5 bits (160), Expect = 2e-10
Identities = 46/123 (37%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
Frame = -3
Query: 785 RXLXC-KGKMRNRXXIQRKGPX--HNFQTRXQGLTRAFXQHXPVWSS*MLTS*TXLKLAP 615
R + C KGKMRNR QRKG H + G F V + S L+LAP
Sbjct: 184 RGVRCGKGKMRNRRYTQRKGILIVHGESSEMLG----FRNIRGV-DQMSIDSLDLLELAP 238
Query: 614 GGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVL 435
GG GR +IWT+SAF +LD +FG + ++ F LP + + DL L SD ++ +L
Sbjct: 239 GGVAGRLIIWTESAFEKLDKIFGGVEREAELTPGFKLPNRIVTHDDLEELFYSDAVQAIL 298
Query: 434 RAP 426
P
Sbjct: 299 DEP 301
>UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3;
Trichomonas vaginalis G3|Rep: Ribosomal protein,
putative - Trichomonas vaginalis G3
Length = 370
Score = 63.3 bits (147), Expect = 7e-09
Identities = 53/178 (29%), Positives = 87/178 (48%), Gaps = 1/178 (0%)
Frame = -3
Query: 770 KGKMRNRXXIQRKGPXHNFQTRXQGLTRAFXQHXPVWSS*MLTS*TXLKLAPGGHLGRFV 591
KGK R +KGP + +G+ +AF ++ P + + + KLAP +GR
Sbjct: 190 KGKFRRAAYKTKKGPLVIYN-EDKGIVKAF-RNIPGVETISVKALALAKLAPAAQVGRLT 247
Query: 590 IWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRV- 414
+WT+SAF LD ++ S KK F+LP+ M N D+ ++ SD ++ VL + V
Sbjct: 248 VWTESAFKALDGIYES-------KKRFSLPRSIMTNADIEAVITSDAVQSVLNEKKEVVP 300
Query: 413 IRATRKLNPLTNXQGDAETQSLRGRAEEESYLRAAQKEELEGSC*CREEWIEAV*AKP 240
+ R L+ + ++L+ AE LRAAQ+ + + + EAV A+P
Sbjct: 301 LPKCRCCKKLSVGACEDWQKALKEVAE----LRAAQEAKRTSPEVVKAVFAEAVAAQP 354
>UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia
bovis|Rep: Ribosomal protein RPL4A - Babesia bovis
Length = 360
Score = 49.2 bits (112), Expect = 1e-04
Identities = 29/78 (37%), Positives = 41/78 (52%)
Frame = -3
Query: 629 LKLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDE 450
LKLAP G LGR +W++SAF LD +P + N DL+ L++S
Sbjct: 232 LKLAPAGALGRLCVWSKSAFEALDDYIKM------------MPTKLLKNADLSALIESTP 279
Query: 449 IRKVLRAPNKRVIRATRK 396
++ LRAP + +ATRK
Sbjct: 280 VQAALRAPREGTPKATRK 297
>UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2;
Cryptomonadaceae|Rep: 60s ribosomal protein L1 -
Guillardia theta (Cryptomonas phi)
Length = 255
Score = 45.2 bits (102), Expect = 0.002
Identities = 29/73 (39%), Positives = 36/73 (49%)
Frame = -3
Query: 770 KGKMRNRXXIQRKGPXHNFQTRXQGLTRAFXQHXPVWSS*MLTS*TXLKLAPGGHLGRFV 591
KGKMRNR + GP F+ + L S+ LT KLAPGGHLGR
Sbjct: 187 KGKMRNRRFKKPTGPLLVFKNNLKSLRNIANIDCMKISALNLT-----KLAPGGHLGRLC 241
Query: 590 IWTQSAFGRLDPL 552
IW+ AF L+ +
Sbjct: 242 IWSSKAFQMLNTI 254
>UniRef50_UPI0000DA3D75 Cluster: PREDICTED: similar to ribosomal
protein L4; n=3; Rattus norvegicus|Rep: PREDICTED:
similar to ribosomal protein L4 - Rattus norvegicus
Length = 140
Score = 44.0 bits (99), Expect = 0.005
Identities = 20/39 (51%), Positives = 27/39 (69%)
Frame = -3
Query: 494 KMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTN 378
KM N+DL+R+LK EI++ L+AP K + K NPLTN
Sbjct: 3 KMMNSDLSRILKIPEIQRALQAPCKEIQHRVSKKNPLTN 41
>UniRef50_Q6M9P8 Cluster: Putative cytochrome-c oxidase fixO chain;
n=1; Candidatus Protochlamydia amoebophila UWE25|Rep:
Putative cytochrome-c oxidase fixO chain -
Protochlamydia amoebophila (strain UWE25)
Length = 415
Score = 38.3 bits (85), Expect = 0.23
Identities = 24/75 (32%), Positives = 41/75 (54%)
Frame = -3
Query: 521 KKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNXQGDAETQSLRG 342
K+N++L K +N RL+ S + K + N ++ T +L L QG+A+ Q+ +
Sbjct: 75 KQNYSLLAFKESNN--LRLVTSQGLEKYITKVNDSTLKLTSRLLLLREPQGEAKKQAEQL 132
Query: 341 RAEEESYLRAAQKEE 297
A ++S + AQKEE
Sbjct: 133 LASQQSTTKIAQKEE 147
>UniRef50_Q54WV7 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 987
Score = 34.7 bits (76), Expect = 2.8
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = -1
Query: 337 LKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERR 206
+K K+ ++ ++K KALA E+ +KL KAEKL ERR
Sbjct: 410 IKSKSFRKVEKKKKEKALAKREEELMKLDPEFAKHKAEKLEERR 453
>UniRef50_UPI0000EBC685 Cluster: PREDICTED: similar to Hrnr protein;
n=1; Bos taurus|Rep: PREDICTED: similar to Hrnr protein
- Bos taurus
Length = 1606
Score = 33.9 bits (74), Expect = 4.9
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -1
Query: 592 SSGLSPHSAGLTPYSGHGRHHQNKRRTSTCPNRR 491
SSG H +GL+ S +G+H R++S+C +R
Sbjct: 566 SSGFGQHGSGLSQSSSYGQHGSTSRQSSSCGQQR 599
>UniRef50_Q5CF53 Cluster: Putative uncharacterized protein; n=2;
Cryptosporidium|Rep: Putative uncharacterized protein -
Cryptosporidium hominis
Length = 1055
Score = 33.9 bits (74), Expect = 4.9
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Frame = -3
Query: 545 SWKTPSKQKKNFNLPQPKMANTDLTRLL--KSDEIRKVLRAPNK-RVIRATRKLNPLTNX 375
S K PSK KK + + L + KS++IR V+++ K V TRK+N
Sbjct: 574 SIKAPSKVKKKSEKKEEALNKLRLKAEISEKSEKIRGVIKSERKSNVSERTRKMNERKEK 633
Query: 374 QGDAETQSLRGRAEEESYLRAA 309
Q + + R R EEE R A
Sbjct: 634 QKACKERERREREEEERRRRDA 655
>UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1,
putative; n=2; Theileria|Rep: 60S ribosomal subunit
protein L4/L1, putative - Theileria annulata
Length = 426
Score = 33.9 bits (74), Expect = 4.9
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = -3
Query: 629 LKLAPGGHLGRFVIWTQSAFGRLD 558
LKLAP G LGR VI+++SAF LD
Sbjct: 231 LKLAPAGTLGRLVIFSKSAFELLD 254
>UniRef50_Q07U65 Cluster: SNF2-related protein; n=2;
Proteobacteria|Rep: SNF2-related protein -
Rhodopseudomonas palustris (strain BisA53)
Length = 963
Score = 33.5 bits (73), Expect = 6.5
Identities = 26/65 (40%), Positives = 34/65 (52%)
Frame = -1
Query: 397 N*TRSLTXKAMLKLNPYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKL 218
N +R+ + +KL YA L+ RR K LKA ADA K L+ S+ P AEK+
Sbjct: 849 NQSRNWLDEETVKLEAYAEDLESA---NNRRAKELKAEADAAKRALRGSQSIPL--AEKI 903
Query: 217 RERRR 203
E RR
Sbjct: 904 EEERR 908
>UniRef50_Q2NFV7 Cluster: 50S ribosomal protein L4P; n=2;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 259
Score = 33.5 bits (73), Expect = 6.5
Identities = 25/74 (33%), Positives = 34/74 (45%)
Frame = -3
Query: 770 KGKMRNRXXIQRKGPXHNFQTRXQGLTRAFXQHXPVWSS*MLTS*TXLKLAPGGHLGRFV 591
KGK+R R KGP +G++ H V + + LAPG H GR
Sbjct: 183 KGKLRGRKYRTPKGPLV-VVGNDRGISLGARNHAGV-DVVEVNNINAELLAPGTHAGRLT 240
Query: 590 IWTQSAFGRLDPLF 549
I+T+SA +L LF
Sbjct: 241 IYTKSAIEKLGDLF 254
>UniRef50_O60293 Cluster: Coiled-coil domain-containing protein 131;
n=26; Amniota|Rep: Coiled-coil domain-containing protein
131 - Homo sapiens (Human)
Length = 1989
Score = 33.5 bits (73), Expect = 6.5
Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Frame = -3
Query: 560 DPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAP-NKRV-IRATRKLNP 387
DPL P ++K + L + ++AN + RL+KSD+++ +P N V I ++
Sbjct: 762 DPLRTPEALPEEKKIEYRLLKEEIANREKQRLIKSDQLKTSSSSPANSDVEIDGIGRIAM 821
Query: 386 LTNXQGDAETQSLRGR---AEEESYLRAAQKEE 297
+T DAE++ + R ++ES L+ ++E
Sbjct: 822 VTKQVTDAESKLKKHRILLMKDESVLKNLVQQE 854
>UniRef50_Q673S8 Cluster: Ribosomal protein L4; n=3; cellular
organisms|Rep: Ribosomal protein L4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 304
Score = 33.1 bits (72), Expect = 8.6
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -3
Query: 623 LAPGGHLGRFVIWTQSAFGRLD 558
LAPGG GR +WT++A G L+
Sbjct: 283 LAPGGDAGRLTVWTKAAIGALE 304
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 631,010,838
Number of Sequences: 1657284
Number of extensions: 11437783
Number of successful extensions: 29948
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29895
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 70914189703
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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