Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_F09
         (823 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   118   1e-27
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   118   1e-27
SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch...    25   9.8  
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ...    25   9.8  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  118 bits (284), Expect = 1e-27
 Identities = 68/151 (45%), Positives = 96/151 (63%), Gaps = 3/151 (1%)
 Frame = -3

Query: 821 KAWXDILXCTSFRXLXC-KGKMRNRXXIQRKGPXHNFQTRXQGLTRAFXQHXPVWSS*ML 645
           KA+ D++   + R L   KGK+RNR  +QR+GP   F     G+ +AF ++ P      +
Sbjct: 175 KAYRDVIKVANSRKLRAGKGKLRNRRHVQRRGPLVVFN-EDTGIVKAF-RNIPGVEIVNV 232

Query: 644 TS*TXLKLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRL 465
                L+LAPGGHLGRFVIWT+SAFG LD +FGS    ++ KKN+ LP+  ++N D+TRL
Sbjct: 233 RRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEVAQLKKNYFLPENIISNADVTRL 292

Query: 464 LKSDEIRKVLRAPN-KRVIRA-TRKLNPLTN 378
           + SDEI+ +++A    RV RA  +K NPL N
Sbjct: 293 INSDEIQSIVKAAGPSRVKRAHVQKKNPLKN 323


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  118 bits (284), Expect = 1e-27
 Identities = 68/151 (45%), Positives = 96/151 (63%), Gaps = 3/151 (1%)
 Frame = -3

Query: 821 KAWXDILXCTSFRXLXC-KGKMRNRXXIQRKGPXHNFQTRXQGLTRAFXQHXPVWSS*ML 645
           KA+ D++   + R L   KGK+RNR  +QR+GP   F     G+ +AF ++ P      +
Sbjct: 175 KAYRDVVKVANSRKLRAGKGKLRNRRHVQRRGPLVVFN-EDAGIVKAF-RNIPGVEIVNV 232

Query: 644 TS*TXLKLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRL 465
                L+LAPGGHLGRFVIWT+SAFG LD +FGS    ++ KKN+ LP+  ++N D+TRL
Sbjct: 233 RRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEAAQLKKNYFLPENIISNADVTRL 292

Query: 464 LKSDEIRKVLRAPN-KRVIRA-TRKLNPLTN 378
           + SDEI+ +++A    RV RA  +K NPL N
Sbjct: 293 INSDEIQSIVKAAGPSRVKRAHVQKKNPLKN 323


>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 255 SFNPLFSASARAFKFFLLRSSKIAFLFSTAA*GLSFSIALXVSERV 392
           +F PL S + R+F     R+ K+A L +    G   S+ L ++++V
Sbjct: 9   NFTPLKSIAPRSFSTTSSRAFKVAVLGAGGGIGQPLSMLLKLNDKV 54


>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 15/65 (23%), Positives = 29/65 (44%)
 Frame = -3

Query: 566 RLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNP 387
           RL+    +W     ++    +PQ K  +    + LK DEIR+        V+  + +LN 
Sbjct: 259 RLESAKTNWVYAKGERFAVAVPQSKQVSFATKKELKKDEIRRSYSYGGSSVVFGSDELNK 318

Query: 386 LTNXQ 372
           + + +
Sbjct: 319 VRSFE 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,548,422
Number of Sequences: 5004
Number of extensions: 45322
Number of successful extensions: 137
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)