Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_F09
         (823 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0578 + 4295386-4296489,4297394-4297507                          128   5e-30
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272...   125   5e-29
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510...    31   1.5  
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216     30   2.6  
09_06_0015 - 20234231-20234344,20234846-20234902,20234968-202351...    29   3.4  
02_04_0073 - 19471254-19472681                                         28   7.8  

>07_01_0578 + 4295386-4296489,4297394-4297507
          Length = 405

 Score =  128 bits (309), Expect = 5e-30
 Identities = 67/156 (42%), Positives = 95/156 (60%)
 Frame = -3

Query: 770 KGKMRNRXXIQRKGPXHNFQTRXQGLTRAFXQHXPVWSS*MLTS*TXLKLAPGGHLGRFV 591
           KGKMRNR  I RKGP   + T    + +AF ++ P      +     L LAPGGHLGRFV
Sbjct: 197 KGKMRNRRYINRKGPLIVYGTEGSKIVKAF-RNLPGVDVANVERLNLLDLAPGGHLGRFV 255

Query: 590 IWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVI 411
           IWT+SAF +L+ ++G+++ PS +KK F LP+PKMAN DL R++ SDE++ V++  NK V 
Sbjct: 256 IWTESAFKKLEEVYGTFEAPSLKKKGFILPRPKMANADLGRIINSDEVQSVVKPLNKEVK 315

Query: 410 RATRKLNPLTNXQGDAETQSLRGRAEEESYLRAAQK 303
           R  ++ NPL N     +     G A + + L  A +
Sbjct: 316 RREKRKNPLKNVAAVLKLNPYFGTARKMATLAEAAR 351


>03_06_0298 -
           32925441-32925998,32926371-32926730,32927161-32927230,
           32927642-32927797,32929181-32929242,32929339-32929352,
           32930421-32930520,32931474-32932574
          Length = 806

 Score =  125 bits (301), Expect = 5e-29
 Identities = 67/156 (42%), Positives = 92/156 (58%)
 Frame = -3

Query: 770 KGKMRNRXXIQRKGPXHNFQTRXQGLTRAFXQHXPVWSS*MLTS*TXLKLAPGGHLGRFV 591
           KGKMRNR  I RKGP   + T    + +AF ++ P      +     L LAPGGHLGRFV
Sbjct: 196 KGKMRNRRYINRKGPLIVYGTEGSKVVKAF-RNLPGVDVANVERLNLLDLAPGGHLGRFV 254

Query: 590 IWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVI 411
           IWT+ AF +LD ++G + TP+ +KK F LP+PKMAN DL+RL+ SDE++ V++  NK V 
Sbjct: 255 IWTECAFKKLDEVYGGFDTPALKKKGFVLPRPKMANADLSRLINSDEVQSVVKPINKEVK 314

Query: 410 RATRKLNPLTNXQGDAETQSLRGRAEEESYLRAAQK 303
               + NPL N     +     G A + + L  A +
Sbjct: 315 LREARRNPLKNVAAVLKLNPYFGTARKMAALAEAAR 350


>03_02_0027 +
           5100865-5100878,5102241-5102708,5102795-5103021,
           5103670-5104577
          Length = 538

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
 Frame = -1

Query: 625 SWLREVILDVSSSGLSPHSAGLTPYSGHGRHHQNKRR----TSTCPNRRWPTLTSHVFSS 458
           S+LR + LD+SSS  +P S+       H  HHQ   +     S+ P   WP       S 
Sbjct: 379 SFLRCLGLDMSSSSSAPPSSSGQQQQHHHHHHQETMQVPLPASSLP--EWPPRLQPEPSP 436

Query: 457 LMRSGRSSVLPTNA 416
           ++ SG    LP +A
Sbjct: 437 MLSSGLGLGLPYDA 450


>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
          Length = 1030

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = -3

Query: 620 APG--GHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANT 480
           APG  G  GR+V+   SA   LDP F SW   S++ K F++ +   A++
Sbjct: 670 APGVDGCSGRYVV-AASAGNALDPGFCSWDYYSREAKAFHIEEISHASS 717


>09_06_0015 -
           20234231-20234344,20234846-20234902,20234968-20235111,
           20235581-20235745,20235817-20236005,20236086-20236326,
           20236412-20236512,20236704-20237241,20238101-20238132,
           20238677-20238760
          Length = 554

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
 Frame = -3

Query: 545 SWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNXQGD 366
           S ++PS      + P P +    L R  + DE    L+A  ++ ++A ++       +  
Sbjct: 367 SHRSPSLYPHVEHAPSPALTEQRLLREQQDDEYLASLQADQEKELKALQEAELRRLEETA 426

Query: 365 AETQSLRGRAEEESYLRAAQ--KEELEGS 285
           A   +L  + +EE   R  Q  +EELE S
Sbjct: 427 AREAALEKQKQEEEERRKKQLEEEELESS 455


>02_04_0073 - 19471254-19472681
          Length = 475

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -1

Query: 580 SPHSAGLTPYSGHGRHHQNKRRTSTCPNRRWPTLTSHVFSSLMR 449
           +P   G +P S HG HH++++   T  N +   L   V   ++R
Sbjct: 20  APRPRGASPLSSHGHHHRSRKIHRTFNNVKITVLCGLVTILVLR 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,335,703
Number of Sequences: 37544
Number of extensions: 330632
Number of successful extensions: 883
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)