Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_F08
         (829 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    27   0.18 
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    27   0.18 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   0.97 
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    25   0.97 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    25   0.97 
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   3.9  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   5.2  

>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 421 SETAGPPPPRSPYTHLNLTTPSNRP 347
           ++ A PPP RSPY  +  T+  ++P
Sbjct: 112 TQVARPPPARSPYEWIKKTSYQSQP 136


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 421 SETAGPPPPRSPYTHLNLTTPSNRP 347
           ++ A PPP RSPY  +  T+  ++P
Sbjct: 112 TQVARPPPARSPYEWIKKTSYQSQP 136


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
 Frame = -1

Query: 466  PRHSMVTTA-GRRSTISETAGPPPPRSPYTHLNLTTPSNRPAWWSLVICLRAWTSRPSAT 290
            P    VTT     ++ +E   P     P T  + TT S    WW+     R  T+RP+ T
Sbjct: 1012 PAPPQVTTGVDTGASSTEHMHPDWTTKPSTWWSSTTTS---PWWTTTTTRRTTTTRPTTT 1068

Query: 289  RCGRSAR*SSW 257
                    ++W
Sbjct: 1069 STTTRPTTTNW 1079


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 52  KNVTSFIELLQPTIPLILSSVRHGITYPQKYFTS 153
           +NV + I +    +P+ L   R+G+  P  YF S
Sbjct: 460 QNVFAVINVFSGELPVFLQEHRNGMYRPSIYFIS 493


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 52  KNVTSFIELLQPTIPLILSSVRHGITYPQKYFTS 153
           +NV + I +    +P+ L   R+G+  P  YF S
Sbjct: 460 QNVFAVINVFSGELPVFLQEHRNGMYRPSIYFIS 493


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 91  IPLILSSVRHGITYPQKYFTSIVCPSTLEPSKNL 192
           +P  LS  R  + YPQ Y  S +   +L  +  L
Sbjct: 25  LPPSLSDTRPMLPYPQNYINSYLFSLSLAQNNQL 58


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 466 PRHSMVTTAGRRSTISETAGPPPP 395
           P  S  TT  R +T+S T  PP P
Sbjct: 438 PEKSTSTTQ-RTTTVSTTEAPPAP 460


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,132
Number of Sequences: 336
Number of extensions: 3433
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22725411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)