Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_F08
         (829 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch...    37   0.003
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    32   0.11 
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    27   2.5  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    27   3.2  
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    27   3.2  
SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces...    27   3.2  
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc...    27   4.3  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   4.3  
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    26   7.5  
SPAC2F3.04c |rim1||mitochondrial single-stranded DNA binding pro...    26   7.5  

>SPBC1289.02c |uap2||U2 snRNP-associated protein
           Uap2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 27/104 (25%), Positives = 41/104 (39%)
 Frame = -3

Query: 437 QAVDDKRDSRAAPSAQSVHAFESDNTKQSTSMVVFSYLPPSVDLQALSNKMREVGEVKFV 258
           + VDDKR  R        H F  +   ++  +++        D+   + K   V  V   
Sbjct: 237 EEVDDKRKKRFNKIVVLKHIFTLEELDKTPELLI----DLKDDITEEAEKCGRVTNVVLY 292

Query: 257 DVLGMGRAIVSFFNVRDAERCVKFFDGSKVDGQTIEVKYF*GYV 126
           D    G   V F N  +AE CV+   G   DG+ +E   + G V
Sbjct: 293 DKEPDGVVTVRFSNNEEAEACVRLMQGRYFDGRVVEASIYDGKV 336


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
 Frame = -3

Query: 413 SRAAPSAQSVHAFESDNTKQSTSMVVFSYLPPSVDLQALSNKMREVGEVKFVDVLGMGR- 237
           +R +P  +S+  F S NT  S ++ + + LP S   + +     + G+++ + +L     
Sbjct: 279 ARPSPLPESIQNFCS-NTAASRNVFIGN-LPSSYHEKEIEEAFGKFGKIEHIKILSKKNI 336

Query: 236 AIVSFFNVRDAERCVK 189
           A V F N+RDA + V+
Sbjct: 337 AFVHFLNIRDAIKVVR 352



 Score = 25.4 bits (53), Expect = 9.9
 Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -3

Query: 341 VVFSYLPPSVDLQALSNKMREVGEVKFVDVL-GMGRAIVSFFNVRDAERCV 192
           V FS++  S+  + L   +R+ GE++ +  L       V++ N+ +A + V
Sbjct: 502 VYFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGFVAYTNISNAMKAV 552


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 421 SETAGPPPPRSPYTHLNLTTP 359
           S T GPPPP  P   ++ TTP
Sbjct: 422 SHTYGPPPPVQPKPKISPTTP 442


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
 Frame = -3

Query: 371 SDNTKQSTSMVVFSYLPPSV----DLQALSNKMREVGEVKFVDVLGMGRAIVSFFNVRDA 204
           S  T +S    +    PP      D+  L N +  + +    D + MG+AIVS F   + 
Sbjct: 252 SKATLKSMKEAILKKYPPGTATETDVAYLINSLVAIHDYGAWDTVLMGKAIVSSFENLNW 311

Query: 203 ERCVKFFDGSK 171
           E  +  FD  K
Sbjct: 312 EAMLSMFDNPK 322


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = -3

Query: 308 LQALSNKMREVGEVKFVDVLGMGRAIVSFFNVRDAERCVKFFDGSKVDGQTIEV 147
           L  L  ++ +V   K  + +    A + F N  DA++ +++ + S V+   IEV
Sbjct: 25  LPQLDAEITDVSVAKTKEGVSRRFAFIGFKNEEDADKAIRYLNKSYVETSRIEV 78


>SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 183

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
 Frame = -3

Query: 419 RDSRAAPS---AQSVHAFESDNTKQSTSMVVFSYLP--PSVDLQALSNKMREVGEVKFVD 255
           R+++  PS   +QS  A         T++V+ +  P   S D+ A      E+   +  D
Sbjct: 74  RENQTKPSNSNSQSNGAISIRGIAGPTNVVIENLAPGTSSDDVAATLLNFGEILNCQVND 133

Query: 254 VLGMGRAIVSFFNVRDAERCVKFFDGSKVDG 162
             G  RA V F  +  A++ V+  DG   DG
Sbjct: 134 SQGKVRASVRFSTLASAQQVVQKLDGVTADG 164


>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 493

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -3

Query: 263 FVDVLGMGRAIVSFFNVRDAERCVKFFDGSKVDGQTI 153
           F +   + + I  F ++ DAE+ V++    K+DG+ I
Sbjct: 167 FSETGDLKKGIAIFQDLSDAEQAVQYLSNCKIDGRLI 203


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +3

Query: 108 FCPPRHNVSSEVLHFNSLSVHFGAVKEFDTTLGVAHVEEADDRPTHAQHIHEL 266
           F  P+ N++ ++L++ + S  FG V  +DT+L     + + +  T  + IH++
Sbjct: 272 FISPK-NLTRDLLNYKANSTLFGGVTIWDTSLAAMSYDNSSE--TFVEAIHKI 321


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 3   FFFFLISSFNVQVIVQEKCDKFYRAF 80
           FF FL  S  +   V EK  +FYR F
Sbjct: 475 FFMFLNDSVILATEVNEKAPRFYRRF 500


>SPAC2F3.04c |rim1||mitochondrial single-stranded DNA binding
           protein Rim1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -3

Query: 485 TKQFEDTSALDGN-YSRQAVDDKRDSRAAPSAQSVHAFESDN 363
           TK  E   +  GN Y R  V        AP+  SV+ F+S N
Sbjct: 35  TKDVERLQSQKGNEYMRYTVASNNGKDVAPTFHSVYVFDSYN 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,866,158
Number of Sequences: 5004
Number of extensions: 55722
Number of successful extensions: 196
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)