Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_F06
(857 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P49821 Cluster: NADH dehydrogenase [ubiquinone] flavopr... 248 2e-64
UniRef50_A1ZAW7 Cluster: CG11423-PA; n=2; Drosophila melanogaste... 192 1e-47
UniRef50_Q4UKA6 Cluster: NADH-quinone oxidoreductase subunit F; ... 188 2e-46
UniRef50_P56913 Cluster: NADH-quinone oxidoreductase subunit F 2... 124 2e-27
UniRef50_Q8F7Q4 Cluster: NADH dehydrogenase I, F subunit; n=9; B... 122 2e-26
UniRef50_A7CUG0 Cluster: NADH dehydrogenase; n=1; Opitutaceae ba... 117 3e-25
UniRef50_Q6MDR1 Cluster: Probable NADH-ubiquinone oxidoreductase... 116 6e-25
UniRef50_A1ALP4 Cluster: NADH dehydrogenase; n=1; Pelobacter pro... 114 3e-24
UniRef50_Q9XAQ9 Cluster: NADH-quinone oxidoreductase subunit F; ... 111 2e-23
UniRef50_Q1IS37 Cluster: NADH-quinone oxidoreductase, F subunit;... 110 4e-23
UniRef50_Q2S5I8 Cluster: Respiratory-chain NADH dehydrogenase 51... 109 7e-23
UniRef50_A6FCN1 Cluster: NuoF2 NADH I CHAIN F; n=1; Moritella sp... 103 8e-21
UniRef50_A5UVG4 Cluster: NADH-quinone oxidoreductase, F subunit;... 101 2e-20
UniRef50_Q1IZW8 Cluster: NADH-quinone oxidoreductase, F subunit;... 99 7e-20
UniRef50_Q56222 Cluster: NADH-quinone oxidoreductase subunit 1; ... 98 3e-19
UniRef50_Q2C5T6 Cluster: NADH dehydrogenase I, F subunit; n=2; V... 93 1e-17
UniRef50_Q2AG83 Cluster: 4Fe-4S ferredoxin, iron-sulfur binding:... 93 1e-17
UniRef50_Q746S7 Cluster: NADH dehydrogenase I, F subunit; n=7; D... 92 1e-17
UniRef50_A0RMD3 Cluster: NADH-quinone oxidoreductase chain f; n=... 92 1e-17
UniRef50_A1Z9Z7 Cluster: CG8102-PA, isoform A; n=4; Sophophora|R... 92 2e-17
UniRef50_Q2LQE7 Cluster: NADH-quinone oxidoreductase chain F; n=... 91 3e-17
UniRef50_Q2LYA9 Cluster: NADH:ubiquinone oxidoreductase, NADH-bi... 89 1e-16
UniRef50_Q6AQG1 Cluster: Probable NADP-reducing hydrogenase, 51 ... 89 2e-16
UniRef50_A4MHV7 Cluster: NADH dehydrogenase; n=5; Bacteria|Rep: ... 88 3e-16
UniRef50_Q8RBC9 Cluster: NADH:ubiquinone oxidoreductase, NADH-bi... 87 4e-16
UniRef50_Q2LS97 Cluster: NADH-quinone oxidoreductase chain F; n=... 86 1e-15
UniRef50_P74024 Cluster: Hydrogenase subunit; n=13; Bacteria|Rep... 86 1e-15
UniRef50_A5FXJ6 Cluster: NADH dehydrogenase; n=1; Acidiphilium c... 85 2e-15
UniRef50_A3EW61 Cluster: NADH ubiquinone oxidoreductase; n=1; Le... 82 2e-14
UniRef50_Q9WY70 Cluster: NADP-reducing hydrogenase, subunit C; n... 81 3e-14
UniRef50_A2DV30 Cluster: Respiratory-chain NADH dehydrogenase 51... 81 4e-14
UniRef50_Q3ZXP7 Cluster: Hydrogenase subunit HymB; n=7; Bacteria... 80 6e-14
UniRef50_A3ETZ6 Cluster: NADH ubiquinone oxidoreductase; n=1; Le... 80 6e-14
UniRef50_Q6N1Z2 Cluster: NADH-ubiquinone dehydrogenase chain F; ... 79 2e-13
UniRef50_O27592 Cluster: NADP-reducing hydrogenase, subunit C; n... 79 2e-13
UniRef50_Q8ABI5 Cluster: NADH:ubiquinone oxidoreductase subunit;... 78 2e-13
UniRef50_A6GJI0 Cluster: Putative NADH dehydrogenase I chain F; ... 78 2e-13
UniRef50_Q47HE6 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 78 3e-13
UniRef50_Q9I0J7 Cluster: NADH-quinone oxidoreductase subunit F; ... 77 8e-13
UniRef50_Q835I8 Cluster: NAD-dependent formate dehydrogenase, be... 76 1e-12
UniRef50_O94500 Cluster: Iron sulfur cluster assembly protein; n... 75 3e-12
UniRef50_A5FSK8 Cluster: NADH dehydrogenase; n=3; Dehalococcoide... 73 7e-12
UniRef50_A6PMG7 Cluster: NADH dehydrogenase (Quinone) precursor;... 72 2e-11
UniRef50_A7IMB3 Cluster: NADH dehydrogenase; n=3; Proteobacteria... 71 5e-11
UniRef50_O66841 Cluster: NADH-quinone oxidoreductase subunit F; ... 70 7e-11
UniRef50_Q9ZBV8 Cluster: Putative respiratory chain oxidoreducta... 70 9e-11
UniRef50_Q51696 Cluster: Putative uncharacterized protein ORF2; ... 69 2e-10
UniRef50_A0NMW4 Cluster: NADH:ubiquinone oxidoreductase, NADH-bi... 68 3e-10
UniRef50_A5N6F8 Cluster: NADH dehydrogenase-related protein; n=1... 67 6e-10
UniRef50_UPI0000384AE3 Cluster: COG1894: NADH:ubiquinone oxidore... 66 8e-10
UniRef50_A1WBG0 Cluster: NADH dehydrogenase (Quinone) precursor;... 63 8e-09
UniRef50_Q603S6 Cluster: NAD-reducing hydrogenase, alpha subunit... 62 1e-08
UniRef50_Q3A639 Cluster: NADH:ubiquinone oxidoreductase, NADH-bi... 61 3e-08
UniRef50_Q5P4U3 Cluster: Formate dehydrogenase, NAD(P) reducing,... 60 5e-08
UniRef50_A6LZW7 Cluster: 4Fe-4S ferredoxin, iron-sulfur binding ... 60 5e-08
UniRef50_Q18DS5 Cluster: NAD-reducing hydrogenase, alpha subunit... 60 5e-08
UniRef50_Q7WMR8 Cluster: NAD-dependent formate dehydrogenase bet... 60 7e-08
UniRef50_P77907 Cluster: Formate dehydrogenase beta subunit; n=2... 60 9e-08
UniRef50_Q1V283 Cluster: NAD-dependent formate dehydrogenase bet... 57 5e-07
UniRef50_A1SU84 Cluster: Hydrogenase, NADP-reducing subunit C; n... 57 5e-07
UniRef50_A1HDX5 Cluster: NADH dehydrogenase; n=4; Ralstonia pick... 56 9e-07
UniRef50_UPI0000E479C5 Cluster: PREDICTED: similar to mitochondr... 56 1e-06
UniRef50_Q6NDH3 Cluster: Possible oxidoreductase; n=5; Proteobac... 54 3e-06
UniRef50_A6Q1P8 Cluster: FAD-dependent pyridine nucleotide-disul... 52 2e-05
UniRef50_Q1K3H5 Cluster: FAD-dependent pyridine nucleotide-disul... 51 3e-05
UniRef50_Q73MB5 Cluster: Pyridine nucleotide-disulphide oxidored... 49 1e-04
UniRef50_Q2AFM4 Cluster: Respiratory-chain NADH dehydrogenase do... 49 1e-04
UniRef50_A1SNE6 Cluster: Respiratory-chain NADH dehydrogenase do... 49 2e-04
UniRef50_A6QCF8 Cluster: FAD-dependent pyridine nucleotide-disul... 47 7e-04
UniRef50_A5X3H0 Cluster: HtxX; n=1; Xanthobacter flavus|Rep: Htx... 46 0.002
UniRef50_Q5V638 Cluster: Putative NADH dehydrogenase I, F subuni... 45 0.003
UniRef50_Q74FU5 Cluster: Fe(III) reductase, beta subunit; n=6; G... 44 0.004
UniRef50_Q65UM2 Cluster: GltD protein; n=2; Pasteurellaceae|Rep:... 44 0.004
UniRef50_Q9ACZ1 Cluster: Putative oxidoreductase; n=3; Streptomy... 44 0.005
UniRef50_A0K164 Cluster: NADH dehydrogenase; n=2; Actinomycetale... 44 0.005
UniRef50_Q4AEJ7 Cluster: Hydrogen dehydrogenase; n=1; Chlorobium... 43 0.009
UniRef50_Q1PZQ6 Cluster: Similar to NADH dehydrogenase I chain F... 43 0.009
UniRef50_O96948 Cluster: Hydrogenase; n=14; Eukaryota|Rep: Hydro... 41 0.035
UniRef50_Q67JR5 Cluster: NADH dehydrogenase subunit; n=1; Symbio... 38 0.43
UniRef50_UPI00006DD0D0 Cluster: hypothetical protein Bmal2_03001... 37 0.57
UniRef50_Q8CAM2 Cluster: Adult male hypothalamus cDNA, RIKEN ful... 37 0.57
UniRef50_Q2GRR4 Cluster: Putative uncharacterized protein; n=2; ... 36 1.3
UniRef50_UPI0000E8082E Cluster: PREDICTED: similar to KIAA1619 p... 36 1.7
UniRef50_UPI0000DB7593 Cluster: PREDICTED: similar to NFAT CG111... 36 1.7
UniRef50_A6DNW3 Cluster: Putative uncharacterized protein; n=1; ... 35 2.3
UniRef50_Q0J124 Cluster: Os09g0467700 protein; n=1; Oryza sativa... 35 3.0
UniRef50_Q4UGM9 Cluster: Theileria parva Tpr-related protein, pu... 34 4.0
UniRef50_Q4Q2I6 Cluster: Putative uncharacterized protein; n=3; ... 34 4.0
UniRef50_UPI0000E816CC Cluster: PREDICTED: hypothetical protein;... 33 7.0
UniRef50_A7ATC7 Cluster: Variant erythrocyte surface antigen-1, ... 33 7.0
UniRef50_A6GNP4 Cluster: Cellulose synthase operon protein C; n=... 33 9.2
UniRef50_A1SFH1 Cluster: Pentapeptide repeat protein; n=1; Nocar... 33 9.2
UniRef50_Q00TP5 Cluster: FOG: Ankyrin repeat; n=1; Ostreococcus ... 33 9.2
UniRef50_P38201 Cluster: Uncharacterized protein YBL029W; n=2; S... 33 9.2
UniRef50_P28739 Cluster: Kinesin-like protein klpA; n=8; Eurotio... 33 9.2
>UniRef50_P49821 Cluster: NADH dehydrogenase [ubiquinone]
flavoprotein 1, mitochondrial precursor; n=215; cellular
organisms|Rep: NADH dehydrogenase [ubiquinone]
flavoprotein 1, mitochondrial precursor - Homo sapiens
(Human)
Length = 464
Score = 248 bits (606), Expect = 2e-64
Identities = 113/138 (81%), Positives = 121/138 (87%)
Frame = -1
Query: 578 PLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTP 399
PLIPK+VCETVLMDFD LV AQT LGTAA+IVMD+STDIVKAIARLI FYKHESCGQCTP
Sbjct: 325 PLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTP 384
Query: 398 CREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRP 219
CREGV WMNK++ RFV G+A P EID LWEISKQIEGHTICALGDGAAWPVQGLIRHFRP
Sbjct: 385 CREGVDWMNKVMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRP 444
Query: 218 ELERRMQEFSAAHGPSKA 165
ELE RMQ F+ H +A
Sbjct: 445 ELEERMQRFAQQHQARQA 462
Score = 66.5 bits (155), Expect = 8e-10
Identities = 28/30 (93%), Positives = 30/30 (100%)
Frame = -3
Query: 666 LKELIERHAGGVTGGWDNLLAIIPGGSSTP 577
LKELIE+HAGGVTGGWDNLLA+IPGGSSTP
Sbjct: 296 LKELIEKHAGGVTGGWDNLLAVIPGGSSTP 325
Score = 45.2 bits (102), Expect = 0.002
Identities = 24/44 (54%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = -2
Query: 796 PTIFXXGGXXXHRSG-PXXIWHEAFNISGHVNTPCTVEEEMSIP 668
PTI GG G + FNISGHVN PCTVEEEMS+P
Sbjct: 252 PTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVP 295
>UniRef50_A1ZAW7 Cluster: CG11423-PA; n=2; Drosophila
melanogaster|Rep: CG11423-PA - Drosophila melanogaster
(Fruit fly)
Length = 702
Score = 192 bits (468), Expect = 1e-47
Identities = 88/141 (62%), Positives = 111/141 (78%)
Frame = -1
Query: 578 PLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTP 399
P I K + + D+DGL+A ++S+GT A+IVM+K TDI+KAIARL FYKHESCGQCTP
Sbjct: 548 PCITKEHASSAIHDYDGLMAVRSSMGTGALIVMNKDTDIIKAIARLSAFYKHESCGQCTP 607
Query: 398 CREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRP 219
CREG+ W+N I++RFV G A EIDML+E++KQIEGHTICAL DGAAWP QGLIR+FRP
Sbjct: 608 CREGLHWVNMIMHRFVTGQAQIAEIDMLFELTKQIEGHTICALADGAAWPPQGLIRNFRP 667
Query: 218 ELERRMQEFSAAHGPSKAERL 156
+E R+++ AA +KAE L
Sbjct: 668 VIEERIKK-RAAEDQAKAEAL 687
Score = 67.3 bits (157), Expect = 5e-10
Identities = 32/46 (69%), Positives = 36/46 (78%), Gaps = 3/46 (6%)
Frame = -3
Query: 663 KELIERHAGGVTGGWDNLLAIIPGGSSTPAHTQERLRDSV---DGL 535
+ELIERHAGGV GGWDNLLAIIPGGSSTP T+E ++ DGL
Sbjct: 520 RELIERHAGGVIGGWDNLLAIIPGGSSTPCITKEHASSAIHDYDGL 565
Score = 42.3 bits (95), Expect = 0.015
Identities = 23/46 (50%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -2
Query: 796 PTIFXXGGXXXHRSG-PXXIWHEAFNISGHVNTPCTVEEEMSIPAQ 662
PTI GG G + FNISGHV PCTVEEEMS+P +
Sbjct: 475 PTICRRGGNWFASFGRTRNSGTKLFNISGHVCNPCTVEEEMSMPTR 520
>UniRef50_Q4UKA6 Cluster: NADH-quinone oxidoreductase subunit F;
n=11; Proteobacteria|Rep: NADH-quinone oxidoreductase
subunit F - Rickettsia felis (Rickettsia azadi)
Length = 422
Score = 188 bits (458), Expect = 2e-46
Identities = 86/132 (65%), Positives = 103/132 (78%)
Frame = -1
Query: 578 PLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTP 399
PL+PK++CE V MDFD L A + LGT IIVMDKSTDI+ AIARL FY HESCGQCTP
Sbjct: 291 PLLPKSLCE-VDMDFDSLRTAGSGLGTGGIIVMDKSTDIIYAIARLSKFYMHESCGQCTP 349
Query: 398 CREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRP 219
CREG WM +++ R V GNA EID L ++K+IEGHTICALGD AAWP+QGLIRHFR
Sbjct: 350 CREGTGWMWRVMMRLVKGNAQKSEIDELLNVTKEIEGHTICALGDAAAWPIQGLIRHFRS 409
Query: 218 ELERRMQEFSAA 183
E+E R++ +S+A
Sbjct: 410 EIEERIKGWSSA 421
Score = 57.6 bits (133), Expect = 4e-07
Identities = 25/30 (83%), Positives = 27/30 (90%)
Frame = -3
Query: 666 LKELIERHAGGVTGGWDNLLAIIPGGSSTP 577
LKELIE++AGGV GGWDNL AIIPGGSS P
Sbjct: 262 LKELIEKYAGGVRGGWDNLKAIIPGGSSVP 291
Score = 35.9 bits (79), Expect = 1.3
Identities = 20/43 (46%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -2
Query: 796 PTIFXXGGXXXHRSG-PXXIWHEAFNISGHVNTPCTVEEEMSI 671
PTI G G P + F ISGHVN PC VEE M I
Sbjct: 218 PTILRRGASWFASIGKPNNTGTKIFCISGHVNKPCNVEEAMGI 260
>UniRef50_P56913 Cluster: NADH-quinone oxidoreductase subunit F 2;
n=100; Proteobacteria|Rep: NADH-quinone oxidoreductase
subunit F 2 - Rhizobium meliloti (Sinorhizobium
meliloti)
Length = 421
Score = 124 bits (300), Expect = 2e-27
Identities = 58/128 (45%), Positives = 83/128 (64%)
Frame = -1
Query: 578 PLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTP 399
P+IP+ E V MDFD L AA + LG+A ++V+D ST +VK R+I F+ HESCG+CTP
Sbjct: 289 PVIPEGELE-VGMDFDSLTAAGSMLGSAGVVVIDDSTCMVKLATRIIEFFHHESCGKCTP 347
Query: 398 CREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRP 219
CREG+ W K++ R G +++ L + K I G+T CALGDGAA ++ ++HFR
Sbjct: 348 CREGLDWTVKVLRRIEAGEGETGDLEQLEMLCKGIFGNTFCALGDGAAMGLRAALKHFRA 407
Query: 218 ELERRMQE 195
E ++E
Sbjct: 408 EFVAHIEE 415
Score = 35.1 bits (77), Expect = 2.3
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = -3
Query: 666 LKELIERHAGGVTGGWDNLLAIIPGGSSTPAHTQERLRDSVD 541
L+EL+E HAGG G + A+IPGG S P + L +D
Sbjct: 261 LRELVEEHAGGPLPG-RKVKAVIPGGVSAPVIPEGELEVGMD 301
>UniRef50_Q8F7Q4 Cluster: NADH dehydrogenase I, F subunit; n=9;
Bacteria|Rep: NADH dehydrogenase I, F subunit -
Leptospira interrogans
Length = 443
Score = 122 bits (293), Expect = 2e-26
Identities = 51/128 (39%), Positives = 82/128 (64%), Gaps = 1/128 (0%)
Frame = -1
Query: 578 PLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTP 399
P++ C+T MDF+ + A +T LG+ A+IV+ + TDIV+ R FY HESCGQCTP
Sbjct: 289 PILTAEECKTANMDFESMAAHKTMLGSGAVIVLAEGTDIVETTYRFARFYAHESCGQCTP 348
Query: 398 CREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIE-GHTICALGDGAAWPVQGLIRHFR 222
CREG W+ I+Y+ +G + ++ID+++ +S+ +E G TIC L D V+ ++ FR
Sbjct: 349 CREGTHWVRDILYKIREGEGTTEDIDLIFSLSRNMEGGTTICPLSDACVGAVRPALQKFR 408
Query: 221 PELERRMQ 198
E + +++
Sbjct: 409 SEFDAKLK 416
>UniRef50_A7CUG0 Cluster: NADH dehydrogenase; n=1; Opitutaceae
bacterium TAV2|Rep: NADH dehydrogenase - Opitutaceae
bacterium TAV2
Length = 478
Score = 117 bits (282), Expect = 3e-25
Identities = 51/109 (46%), Positives = 71/109 (65%)
Frame = -1
Query: 554 ETVLMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWM 375
E + MDFD L A + G+ +IVMD S ++V+A+A + FY HESCGQCTPCREG WM
Sbjct: 332 EDIPMDFDTLAACGSMGGSGGVIVMDDSVNMVEALANINAFYSHESCGQCTPCREGSLWM 391
Query: 374 NKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRH 228
KI R V G A ++ +L ++ QI G TICA+G+ +WP Q +++
Sbjct: 392 KKITARMVHGTARAEDAALLKGVADQIPGRTICAMGEACSWPTQSFLQN 440
>UniRef50_Q6MDR1 Cluster: Probable NADH-ubiquinone oxidoreductase
chain F; n=1; Candidatus Protochlamydia amoebophila
UWE25|Rep: Probable NADH-ubiquinone oxidoreductase chain
F - Protochlamydia amoebophila (strain UWE25)
Length = 432
Score = 116 bits (280), Expect = 6e-25
Identities = 56/130 (43%), Positives = 79/130 (60%)
Frame = -1
Query: 542 MDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKII 363
MDFD + A ++ LGTA+IIVMD STD+VK RL+ FY++ESCG+CTPCREG W +I+
Sbjct: 300 MDFDSVAAKKSMLGTASIIVMDDSTDMVKVANRLMEFYQNESCGKCTPCREGTRWTKQIL 359
Query: 362 YRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQEFSAA 183
R + G + ++ + I +Q+E + C L GAA P+ IR FR E E + A
Sbjct: 360 TRILAGRGTVGDLKTIERICQQMEMDSFCPLAPGAALPIVSAIREFRGEFESYIMRNIHA 419
Query: 182 HGPSKAERLY 153
P + + Y
Sbjct: 420 DKPPEMKITY 429
>UniRef50_A1ALP4 Cluster: NADH dehydrogenase; n=1; Pelobacter
propionicus DSM 2379|Rep: NADH dehydrogenase -
Pelobacter propionicus (strain DSM 2379)
Length = 427
Score = 114 bits (274), Expect = 3e-24
Identities = 56/124 (45%), Positives = 78/124 (62%)
Frame = -1
Query: 581 PPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCT 402
P L+P++V ET +D + L +T LG+ +IV+ + +V+ + L FY HESCGQCT
Sbjct: 289 PILLPQDV-ETANLDAECLSTYRTMLGSGGVIVIAEGVCMVRLLHTLSRFYAHESCGQCT 347
Query: 401 PCREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFR 222
PCREG +WMN II R V G +++ L I+K I G+T+CALGD A+ PV I FR
Sbjct: 348 PCREGSAWMNDIISRIVAGKGVKGDLESLERITKGIMGNTVCALGDAASMPVINFITKFR 407
Query: 221 PELE 210
E +
Sbjct: 408 AEFD 411
Score = 34.3 bits (75), Expect = 4.0
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = -3
Query: 666 LKELIERHAGGVTGGWDNLLAIIPGGSSTP 577
LK+LI GG+ G + L A+IPGGSSTP
Sbjct: 261 LKKLIFEECGGILNGKE-LKAVIPGGSSTP 289
>UniRef50_Q9XAQ9 Cluster: NADH-quinone oxidoreductase subunit F;
n=32; Bacteria|Rep: NADH-quinone oxidoreductase subunit
F - Streptomyces coelicolor
Length = 449
Score = 111 bits (267), Expect = 2e-23
Identities = 50/128 (39%), Positives = 78/128 (60%)
Frame = -1
Query: 548 VLMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNK 369
V +D++G+ AA + LGT A+ D++T +V+A+ R FY HESCG+CTPCREG W+ +
Sbjct: 311 VPLDYEGVGAAGSMLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQ 370
Query: 368 IIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQEFS 189
++ G ++D L +I+ I G + CALGDGAA P+ +++FR E E +
Sbjct: 371 LLRDIEAGKGQMSDLDKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYEEHITGRG 430
Query: 188 AAHGPSKA 165
P+K+
Sbjct: 431 CPFDPAKS 438
>UniRef50_Q1IS37 Cluster: NADH-quinone oxidoreductase, F subunit;
n=9; Bacteria|Rep: NADH-quinone oxidoreductase, F
subunit - Acidobacteria bacterium (strain Ellin345)
Length = 439
Score = 110 bits (265), Expect = 4e-23
Identities = 49/117 (41%), Positives = 68/117 (58%)
Frame = -1
Query: 548 VLMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNK 369
+ MDFD ++ A + LG+ ++V+D T IVK R I FY+HESCG C PCREG W+ K
Sbjct: 304 IAMDFDSVMKAGSMLGSGGVVVLDDRTCIVKFALRTIKFYQHESCGWCIPCREGTDWLKK 363
Query: 368 IIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQ 198
+ RF G K+ID + ++ + G T C LGD AA P + FR E E ++
Sbjct: 364 TLTRFHAGGGIKKDIDNIKYLADNMLGRTFCPLGDAAAMPTIAFVEKFRKEFEDHLE 420
Score = 37.5 bits (83), Expect = 0.43
Identities = 18/42 (42%), Positives = 27/42 (64%)
Frame = -3
Query: 666 LKELIERHAGGVTGGWDNLLAIIPGGSSTPAHTQERLRDSVD 541
LK++I GG+ GG L A++PGGSSTP T + + ++D
Sbjct: 267 LKKMIYEVGGGIQGG-RGLKAVVPGGSSTPVLTADEIDIAMD 307
>UniRef50_Q2S5I8 Cluster: Respiratory-chain NADH dehydrogenase 51 Kd
subunit family; n=2; Sphingobacteriales genera incertae
sedis|Rep: Respiratory-chain NADH dehydrogenase 51 Kd
subunit family - Salinibacter ruber (strain DSM 13855)
Length = 464
Score = 109 bits (263), Expect = 7e-23
Identities = 49/128 (38%), Positives = 77/128 (60%), Gaps = 1/128 (0%)
Frame = -1
Query: 578 PLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTP 399
P +P + + + M+ + L + GT +V+D+ TD+V + R+ FY+ E+CGQCTP
Sbjct: 315 PPVPADQIDGISMNDESLGEVGSRTGTFCPLVLDEETDMVSFLRRVAHFYQDETCGQCTP 374
Query: 398 CREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIE-GHTICALGDGAAWPVQGLIRHFR 222
CREG SW+ KI+ R +G ++ID+L E+ ++ G TICA DGA PV+ ++ FR
Sbjct: 375 CREGTSWLEKILARIDEGEGRMRDIDLLLELCDNMDGGRTICAFADGAVGPVRATVKRFR 434
Query: 221 PELERRMQ 198
E + Q
Sbjct: 435 EEFAAKCQ 442
>UniRef50_A6FCN1 Cluster: NuoF2 NADH I CHAIN F; n=1; Moritella sp.
PE36|Rep: NuoF2 NADH I CHAIN F - Moritella sp. PE36
Length = 425
Score = 103 bits (246), Expect = 8e-21
Identities = 46/123 (37%), Positives = 73/123 (59%)
Frame = -1
Query: 578 PLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTP 399
P+IP + V M+F L A + +G+AA+I +D++ I R+ F+ HESCG+C P
Sbjct: 288 PMIPLAGLD-VKMNFADLATADSMMGSAAVIALDETASIPAVGRRIAEFFSHESCGKCAP 346
Query: 398 CREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRP 219
CREG+ W +KI+ R G P +++ L I + ++ CALG GAAW ++ ++HF
Sbjct: 347 CREGLPWASKILNRIESGQGRPGDLEQLQVICGGVFNNSFCALGVGAAWAIRATLKHFPH 406
Query: 218 ELE 210
E +
Sbjct: 407 EYD 409
>UniRef50_A5UVG4 Cluster: NADH-quinone oxidoreductase, F subunit;
n=9; Bacteria|Rep: NADH-quinone oxidoreductase, F
subunit - Roseiflexus sp. RS-1
Length = 449
Score = 101 bits (243), Expect = 2e-20
Identities = 42/118 (35%), Positives = 74/118 (62%)
Frame = -1
Query: 548 VLMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNK 369
V MD++ L A + LG+ +IV+D+S V+ ++ F+KHESCG+CTPCREG ++ K
Sbjct: 318 VTMDYEALAAKGSMLGSGGVIVLDESVSAVEVAYKMDEFFKHESCGKCTPCREGTYFLVK 377
Query: 368 IIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQE 195
+++R G+ ++I +L ++ Q+ G+ C LG+ A P++ +R F E E+ + +
Sbjct: 378 VLHRITHGHGRKEDIPLLHDVYHQMAGNCFCLLGESAVVPIRSALRLFPHEFEQAIAQ 435
>UniRef50_Q1IZW8 Cluster: NADH-quinone oxidoreductase, F subunit;
n=1; Deinococcus geothermalis DSM 11300|Rep:
NADH-quinone oxidoreductase, F subunit - Deinococcus
geothermalis (strain DSM 11300)
Length = 446
Score = 99 bits (238), Expect = 7e-20
Identities = 45/116 (38%), Positives = 69/116 (59%), Gaps = 1/116 (0%)
Frame = -1
Query: 542 MDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVS-WMNKI 366
MD++ + AA + LGT + ++ K+ IV L+ FY HESCG+CTPCREG+S WM ++
Sbjct: 316 MDYESVAAAGSMLGTGGVTLIPKADCIVNVTWNLVRFYAHESCGKCTPCREGISGWMVRM 375
Query: 365 IYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQ 198
+ V G+ P ++ ++ ++S I G + CAL D PV I+ FR E + Q
Sbjct: 376 YEKLVRGHGQPGDVQLILDMSDNIGGRSFCALADACLGPVLSSIKLFREEYDTLAQ 431
>UniRef50_Q56222 Cluster: NADH-quinone oxidoreductase subunit 1;
n=6; Bacteria|Rep: NADH-quinone oxidoreductase subunit 1
- Thermus thermophilus (strain HB8 / ATCC 27634 / DSM
579)
Length = 438
Score = 97.9 bits (233), Expect = 3e-19
Identities = 48/124 (38%), Positives = 73/124 (58%), Gaps = 2/124 (1%)
Frame = -1
Query: 581 PPL-IPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQC 405
PPL + V +T M ++ L A + LGT +I++ + +V A+ L FY HESCG+C
Sbjct: 298 PPLPFTEEVLDTP-MSYEHLQAKGSMLGTGGVILIPERVSMVDAMWNLTRFYAHESCGKC 356
Query: 404 TPCREGVS-WMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRH 228
TPCREGV+ +M + + G K+++ L + IEG + C L D A WPV+G +RH
Sbjct: 357 TPCREGVAGFMVNLFAKIGTGQGEEKDVENLEALLPLIEGRSFCPLADAAVWPVKGSLRH 416
Query: 227 FRPE 216
F+ +
Sbjct: 417 FKDQ 420
>UniRef50_Q2C5T6 Cluster: NADH dehydrogenase I, F subunit; n=2;
Vibrionaceae|Rep: NADH dehydrogenase I, F subunit -
Photobacterium sp. SKA34
Length = 427
Score = 92.7 bits (220), Expect = 1e-17
Identities = 41/121 (33%), Positives = 69/121 (57%)
Frame = -1
Query: 542 MDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKII 363
+D+DG + LGT IIVMD + + + L F+ ESCG CTPCR+G+ ++ ++
Sbjct: 298 LDWDGPATVGSRLGTGGIIVMDDAICPIDFMINLTEFFARESCGYCTPCRDGLPYVVHVL 357
Query: 362 YRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQEFSAA 183
+F G A+ K++D+L E+ + I +T CAL GA P+ ++HF+ + ++
Sbjct: 358 KKFETGEATSKDLDLLHELCETIYPNTFCALAPGALMPIMTGLKHFKHVFDSHIEGQRCT 417
Query: 182 H 180
H
Sbjct: 418 H 418
>UniRef50_Q2AG83 Cluster: 4Fe-4S ferredoxin, iron-sulfur
binding:Respiratory-chain NADH dehydrogenase domain, 51
kDa subunit; n=4; Bacteria|Rep: 4Fe-4S ferredoxin,
iron-sulfur binding:Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit - Halothermothrix orenii H 168
Length = 632
Score = 92.7 bits (220), Expect = 1e-17
Identities = 46/131 (35%), Positives = 79/131 (60%), Gaps = 1/131 (0%)
Frame = -1
Query: 542 MDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIM-FYKHESCGQCTPCREGVSWMNKI 366
MDFD L +G+ ++VMD++T +V+ +AR M F ++ESCG+C CREG M KI
Sbjct: 448 MDFDSLQEVGAMIGSGGLVVMDENTCMVE-VARFFMEFTQNESCGKCVLCREGTKQMLKI 506
Query: 365 IYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQEFSA 186
+ R V+G + +++D+L E++ ++ ++C LG A PV +++FR E E +++
Sbjct: 507 LERIVEGKGTMEDLDLLEELALAVKDGSLCGLGKTAPNPVLTTLKYFRDEYEAHVKDKKC 566
Query: 185 AHGPSKAERLY 153
G +A + Y
Sbjct: 567 PAGVCEALKSY 577
>UniRef50_Q746S7 Cluster: NADH dehydrogenase I, F subunit; n=7;
Deltaproteobacteria|Rep: NADH dehydrogenase I, F subunit
- Geobacter sulfurreducens
Length = 423
Score = 92.3 bits (219), Expect = 1e-17
Identities = 46/116 (39%), Positives = 65/116 (56%)
Frame = -1
Query: 548 VLMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNK 369
V MDFD + A + LGT I+V D++T +V A L+ FY ESCG CTPCREG+ ++
Sbjct: 298 VPMDFDAVARAGSRLGTGGIVVFDRNTCMVAATLNLVSFYARESCGWCTPCREGLPFVKD 357
Query: 368 IIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRM 201
++ R G + I +L E Q + C L GA PV+GL+R F E+ +
Sbjct: 358 VLARIEAGAGREEHIAILRE-HVQYLNYAFCPLAPGAMGPVEGLLRLFEDEIREHI 412
>UniRef50_A0RMD3 Cluster: NADH-quinone oxidoreductase chain f; n=1;
Campylobacter fetus subsp. fetus 82-40|Rep: NADH-quinone
oxidoreductase chain f - Campylobacter fetus subsp.
fetus (strain 82-40)
Length = 406
Score = 92.3 bits (219), Expect = 1e-17
Identities = 38/109 (34%), Positives = 63/109 (57%)
Frame = -1
Query: 542 MDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKII 363
+D++ L +++LGT ++V D + + + + L+ FY ESCGQCTPCREG W +++
Sbjct: 289 LDYESLKEFKSALGTGGMMVFDDTISMPEVLLNLLEFYTEESCGQCTPCREGCGWALRVV 348
Query: 362 YRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPE 216
+ V+G S +++D L +IS ++G TIC + G I F E
Sbjct: 349 KKIVEGEGSLRDLDTLKDISYMLDGKTICVFAPAVKDVIMGFITKFENE 397
>UniRef50_A1Z9Z7 Cluster: CG8102-PA, isoform A; n=4; Sophophora|Rep:
CG8102-PA, isoform A - Drosophila melanogaster (Fruit
fly)
Length = 481
Score = 91.9 bits (218), Expect = 2e-17
Identities = 47/131 (35%), Positives = 69/131 (52%), Gaps = 1/131 (0%)
Frame = -1
Query: 578 PLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTP 399
PL+ + VLMDFD L A + G A+IVM K D + + R I F++ +C QC+
Sbjct: 348 PLLDPSTAGKVLMDFDSLTDAGSGFGCGAVIVMTKDCDPLAIMLRSIQFFEKHTCKQCSY 407
Query: 398 CREGVSWMNKIIYRFVDGNASPKEIDMLWEIS-KQIEGHTICALGDGAAWPVQGLIRHFR 222
CR+G W+ +I RFV G P EID I+ K ICAL + L+R F
Sbjct: 408 CRDGAIWLPEIFARFVKGQTHPHEIDWTLVIADKMRNSKPICALAYSQVSVAESLVRMFS 467
Query: 221 PELERRMQEFS 189
++E R+ +++
Sbjct: 468 RKIEERLLKYA 478
Score = 58.0 bits (134), Expect = 3e-07
Identities = 24/30 (80%), Positives = 26/30 (86%)
Frame = -3
Query: 666 LKELIERHAGGVTGGWDNLLAIIPGGSSTP 577
LK+LIERHAGGV GGWDNL A+ PGG STP
Sbjct: 319 LKDLIERHAGGVKGGWDNLAAVFPGGLSTP 348
Score = 37.1 bits (82), Expect = 0.57
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = -2
Query: 721 ISGHVNTPCTVEEEMSIP 668
+SG VN PCTVEEEMSIP
Sbjct: 301 LSGQVNNPCTVEEEMSIP 318
>UniRef50_Q2LQE7 Cluster: NADH-quinone oxidoreductase chain F; n=1;
Syntrophus aciditrophicus SB|Rep: NADH-quinone
oxidoreductase chain F - Syntrophus aciditrophicus
(strain SB)
Length = 574
Score = 91.1 bits (216), Expect = 3e-17
Identities = 39/115 (33%), Positives = 63/115 (54%)
Frame = -1
Query: 554 ETVLMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWM 375
+ + MD+D T LG+ I+V+ + I + R I FY HESCG+C PCREG +
Sbjct: 455 QDLTMDYDSCAKHGTGLGSGGIMVISEDFSIPELALRTIKFYAHESCGKCVPCREGSYTL 514
Query: 374 NKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELE 210
KI+++ + G +I+ + I + G T+C G+ A P+Q ++ FR E +
Sbjct: 515 VKILHKLLSGQGEAADIEKILGICNTVRGLTLCPTGEAFAVPIQAMVEKFRSEFD 569
>UniRef50_Q2LYA9 Cluster: NADH:ubiquinone oxidoreductase,
NADH-binding subunit; n=3; cellular organisms|Rep:
NADH:ubiquinone oxidoreductase, NADH-binding subunit -
Syntrophus aciditrophicus (strain SB)
Length = 637
Score = 89.0 bits (211), Expect = 1e-16
Identities = 45/126 (35%), Positives = 69/126 (54%)
Frame = -1
Query: 542 MDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKII 363
+DFD L A + +G+ +IVMD T +V I F ESCG+C PCREG+ MN+I+
Sbjct: 453 VDFDSLWEAGSMMGSGGMIVMDDKTCMVDIARYFIEFLVSESCGKCVPCREGIYRMNEIL 512
Query: 362 YRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQEFSAA 183
G ++++L +++ I+ ++CALG A PV IR+FR E + ++
Sbjct: 513 QDICAGKGRRGDLELLGRMAEAIKDGSLCALGGSAPNPVLSTIRYFRSEYDAHIRSKKCP 572
Query: 182 HGPSKA 165
G KA
Sbjct: 573 AGVCKA 578
>UniRef50_Q6AQG1 Cluster: Probable NADP-reducing hydrogenase, 51 kDa
subunit; n=1; Desulfotalea psychrophila|Rep: Probable
NADP-reducing hydrogenase, 51 kDa subunit - Desulfotalea
psychrophila
Length = 634
Score = 88.6 bits (210), Expect = 2e-16
Identities = 44/131 (33%), Positives = 73/131 (55%)
Frame = -1
Query: 587 PRPPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQ 408
P +P + +T + D+D LV+A +G+ ++VMD+ST +V + F + ESCGQ
Sbjct: 427 PSGGCLPAHTLDTPV-DYDSLVSAGAMMGSGGLVVMDESTCMVDIARYFLDFTQKESCGQ 485
Query: 407 CTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRH 228
CT C+ G M I+ V G +I++L E+ + + ++C LG AA PV I++
Sbjct: 486 CTLCKLGTKQMLNILEDIVAGRGKEGDIELLLEVGEAVNAGSLCGLGKSAANPVLTTIKY 545
Query: 227 FRPELERRMQE 195
FR E E +++
Sbjct: 546 FRDEYEAHIRD 556
>UniRef50_A4MHV7 Cluster: NADH dehydrogenase; n=5; Bacteria|Rep:
NADH dehydrogenase - Geobacter bemidjiensis Bem
Length = 593
Score = 87.8 bits (208), Expect = 3e-16
Identities = 43/126 (34%), Positives = 69/126 (54%)
Frame = -1
Query: 587 PRPPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQ 408
P IP V +T + D+D L+ A +G+ ++VMD++T +V + F K ESCG+
Sbjct: 397 PSGGCIPAEVLDTPV-DYDSLIKAGAMMGSGGLVVMDETTCMVDVARFFLTFTKMESCGK 455
Query: 407 CTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRH 228
C PCR G+ M I+ + +G +ID L E+ I+ ++C LG A P+ +++
Sbjct: 456 CVPCRIGLKAMLDILEKITEGRGEMADIDTLLEMGATIKKASLCGLGQTAPNPILSTVKY 515
Query: 227 FRPELE 210
FR E E
Sbjct: 516 FRNEYE 521
>UniRef50_Q8RBC9 Cluster: NADH:ubiquinone oxidoreductase,
NADH-binding (51 kD) subunit; n=11; Bacteria|Rep:
NADH:ubiquinone oxidoreductase, NADH-binding (51 kD)
subunit - Thermoanaerobacter tengcongensis
Length = 596
Score = 87.4 bits (207), Expect = 4e-16
Identities = 43/131 (32%), Positives = 70/131 (53%)
Frame = -1
Query: 587 PRPPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQ 408
P IP + +T + D+D L +A +G+ ++VMD+ T +V + F ESCG+
Sbjct: 398 PSGGCIPAELLDTPI-DYDSLTSAGAMMGSGGLVVMDEDTCMVNVAKFFLEFTVDESCGK 456
Query: 407 CTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRH 228
C PCR G M +++ + G +I+ L E++K I+ +C LG A PV +R+
Sbjct: 457 CAPCRIGTKRMLELLDKITSGKGEEGDIEKLEELAKTIKATALCGLGQTAPNPVLSTLRY 516
Query: 227 FRPELERRMQE 195
FR E E ++E
Sbjct: 517 FRHEYEAHIKE 527
>UniRef50_Q2LS97 Cluster: NADH-quinone oxidoreductase chain F; n=2;
Syntrophus aciditrophicus SB|Rep: NADH-quinone
oxidoreductase chain F - Syntrophus aciditrophicus
(strain SB)
Length = 638
Score = 85.8 bits (203), Expect = 1e-15
Identities = 36/112 (32%), Positives = 68/112 (60%)
Frame = -1
Query: 542 MDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKII 363
+D D + A +LG+ ++V D+ T V + ++ F++HESCGQC PCR G ++ +
Sbjct: 506 LDIDSTIKAGVTLGSGVVLVCDEDTCPVDFLLDVLNFFEHESCGQCVPCRVGTRQLHHLA 565
Query: 362 YRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELER 207
+F G A P ++D++ E +K ++ +++CALG P+ ++++FR + R
Sbjct: 566 RKFATGTAVPGDLDLMVEKAKLMK-NSLCALGQSPILPITTMLKYFREDFLR 616
>UniRef50_P74024 Cluster: Hydrogenase subunit; n=13; Bacteria|Rep:
Hydrogenase subunit - Synechocystis sp. (strain PCC
6803)
Length = 533
Score = 85.8 bits (203), Expect = 1e-15
Identities = 43/130 (33%), Positives = 75/130 (57%)
Frame = -1
Query: 587 PRPPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQ 408
P IP + +T + ++D L+A T +G+ +IVMD+ST++V + F K ESCG+
Sbjct: 404 PSGGCIPADKLDTPI-EYDTLLALGTMMGSGGMIVMDESTNMVDVAQFYMDFCKSESCGK 462
Query: 407 CTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRH 228
C PCR G + ++ RF++G A+ +++ L + ++ ++C LG A PV +R+
Sbjct: 463 CIPCRAGTVQLYDLLTRFLEGEATQEDLIKLENLCHMVKETSLCGLGMSAPNPVISTLRY 522
Query: 227 FRPELERRMQ 198
FR E E ++
Sbjct: 523 FRHEYEELLK 532
>UniRef50_A5FXJ6 Cluster: NADH dehydrogenase; n=1; Acidiphilium
cryptum JF-5|Rep: NADH dehydrogenase - Acidiphilium
cryptum (strain JF-5)
Length = 434
Score = 85.4 bits (202), Expect = 2e-15
Identities = 43/119 (36%), Positives = 65/119 (54%), Gaps = 1/119 (0%)
Frame = -1
Query: 548 VLMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNK 369
V MDFD + + LGTA I+V+D+ V + + F+ ESCG CTPCR+G+ W+ +
Sbjct: 303 VPMDFDSVGKIGSWLGTANILVLDQKRCPVGLLRNIEHFFAQESCGWCTPCRDGLPWVER 362
Query: 368 IIYRFVDGNASPKEIDML-WEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQE 195
I+ G P +I++L + G T C L GA P++ ++ FR E ER + E
Sbjct: 363 ILTALEAGEGEPDDIELLAHHVDFLGPGRTFCDLAPGAMAPLRSGLKFFREEFERHVSE 421
Score = 37.1 bits (82), Expect = 0.57
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = -3
Query: 738 GTKLSIYRVT*TXXAP--WRRR*ASXLKELIERHAGGVTGGWDNLLAIIPGGSST 580
GTKL Y V+ P W + L E+IE HAGG+ G++ A++PGG+ST
Sbjct: 242 GTKL--YGVSGRVNRPGLWELPVGTPLNEIIEEHAGGMREGYE-ARAVLPGGAST 293
>UniRef50_A3EW61 Cluster: NADH ubiquinone oxidoreductase; n=1;
Leptospirillum sp. Group II UBA|Rep: NADH ubiquinone
oxidoreductase - Leptospirillum sp. Group II UBA
Length = 453
Score = 81.8 bits (193), Expect = 2e-14
Identities = 42/135 (31%), Positives = 69/135 (51%)
Frame = -1
Query: 599 YQEAPRPPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHE 420
Y P ++P +T L D+D L A + +G+ +IV+ V + FY+
Sbjct: 297 YPGGPSFGVLPAKDLDTPL-DYDALRALGSGIGSGGVIVLSDKDCPVATARQFAAFYETG 355
Query: 419 SCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQG 240
SCGQC PCR G +++I+ F +G AS + + + IS I+G C L +A+ V+
Sbjct: 356 SCGQCPPCRIGTENLHEILELFENGKASRENVQRILRISDMIKGRGNCGLITASAYSVES 415
Query: 239 LIRHFRPELERRMQE 195
L+RHF E + + +
Sbjct: 416 LVRHFPEEFQSHLDD 430
>UniRef50_Q9WY70 Cluster: NADP-reducing hydrogenase, subunit C; n=9;
Bacteria|Rep: NADP-reducing hydrogenase, subunit C -
Thermotoga maritima
Length = 545
Score = 81.4 bits (192), Expect = 3e-14
Identities = 37/113 (32%), Positives = 61/113 (53%)
Frame = -1
Query: 548 VLMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNK 369
V +DFD SLG+ I+V D++ +V ++ F++HESCG+CTPCREG +
Sbjct: 404 VPLDFDSYAKYGVSLGSGVILVADETHCVVDLALTVMRFFEHESCGKCTPCREGTRMIVN 463
Query: 368 IIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELE 210
I+ R G +++D L EI++ + C LG P+ ++ +F E +
Sbjct: 464 ILERISRGEGKKEDLDTLREIARNAGETSFCGLGQSIPVPLLSIVDNFEEEFK 516
>UniRef50_A2DV30 Cluster: Respiratory-chain NADH dehydrogenase 51 Kd
subunit family protein; n=1; Trichomonas vaginalis
G3|Rep: Respiratory-chain NADH dehydrogenase 51 Kd
subunit family protein - Trichomonas vaginalis G3
Length = 425
Score = 81.0 bits (191), Expect = 4e-14
Identities = 39/125 (31%), Positives = 69/125 (55%)
Frame = -1
Query: 578 PLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTP 399
P I K + ++ FD + + LGT +++V+D + DIV+ R+ FYK E CGQC
Sbjct: 299 PPITKEQAKNAILGFDEMSKIGSGLGTGSLVVIDNTADIVEVYRRIANFYKDECCGQCKQ 358
Query: 398 CREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRP 219
C EG M +I + G + ++ L E++ ++ + IC+ GA+ P++G ++ F+
Sbjct: 359 CVEGTETMAEIFDKIARGKGTKDDVKHLEEVAFGMKKY-ICSFSVGASDPIRGFLKVFKN 417
Query: 218 ELERR 204
+L R
Sbjct: 418 KLLER 422
Score = 56.4 bits (130), Expect = 9e-07
Identities = 25/48 (52%), Positives = 33/48 (68%)
Frame = -3
Query: 666 LKELIERHAGGVTGGWDNLLAIIPGGSSTPAHTQERLRDSVDGLRRSS 523
LKELI+ H GV GGWDNL IIPGG+S P T+E+ ++++ G S
Sbjct: 270 LKELIDVHGSGVRGGWDNLQCIIPGGTSCPPITKEQAKNAILGFDEMS 317
>UniRef50_Q3ZXP7 Cluster: Hydrogenase subunit HymB; n=7;
Bacteria|Rep: Hydrogenase subunit HymB - Dehalococcoides
sp. (strain CBDB1)
Length = 640
Score = 80.2 bits (189), Expect = 6e-14
Identities = 43/141 (30%), Positives = 74/141 (52%)
Frame = -1
Query: 587 PRPPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQ 408
P IP+N+ ++ + D+D L + +G+ +I+MD+ T +V I F ESCG+
Sbjct: 419 PSGGCIPENLLDSPV-DYDALSKLGSMVGSGGLIIMDEETCMVDIARYFINFLSDESCGK 477
Query: 407 CTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRH 228
C PCREG+ + I+ R +G + ++D L ++S + +CALG A P+ +++
Sbjct: 478 CLPCREGLRQLVDILTRITEGKGTMVDMDTLEDLSGVMSEACLCALGQQAPNPLLTTLKY 537
Query: 227 FRPELERRMQEFSAAHGPSKA 165
FR E ++ G KA
Sbjct: 538 FRHEYIDHIKNKHCEAGVCKA 558
>UniRef50_A3ETZ6 Cluster: NADH ubiquinone oxidoreductase; n=1;
Leptospirillum sp. Group II UBA|Rep: NADH ubiquinone
oxidoreductase - Leptospirillum sp. Group II UBA
Length = 627
Score = 80.2 bits (189), Expect = 6e-14
Identities = 49/173 (28%), Positives = 81/173 (46%)
Frame = -1
Query: 575 LIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPC 396
L+P+++ + +D+ + LG+A++IVMD S +V + F HESCGQCTPC
Sbjct: 465 LLPRHL--DLSLDYPSIAEVGAFLGSASVIVMDDSVCMVDLAYWIAAFSHHESCGQCTPC 522
Query: 395 REGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPE 216
R+G + +I+ + V G P +D+L I + +IC LG A + +F E
Sbjct: 523 RDGTEDVYEILLKIVQGEGKPAYLDLLKSIGTYMREASICGLGQSAPNIPLSSMEYFEDE 582
Query: 215 LERRMQEFSAAHGPSKAERLY**CNTRRTSTLHFESIEGTIVQRKMQRDHFSV 57
+ ++ G C+ RR L F + ++ + HFSV
Sbjct: 583 WKAHIENHVCPAGV---------CSMRRDGILLFPPRRSRGIVAELPQMHFSV 626
>UniRef50_Q6N1Z2 Cluster: NADH-ubiquinone dehydrogenase chain F;
n=8; Alphaproteobacteria|Rep: NADH-ubiquinone
dehydrogenase chain F - Rhodopseudomonas palustris
Length = 428
Score = 78.6 bits (185), Expect = 2e-13
Identities = 42/121 (34%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Frame = -1
Query: 548 VLMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNK 369
V +DF A +SLGT A+IV+D V AI R + FY ESCG CTPCR+G+ W++K
Sbjct: 302 VPLDFTSTKKAGSSLGTGALIVLDDRACPVAAIGRHMRFYARESCGLCTPCRDGLPWVSK 361
Query: 368 IIYRFVDGNASPKEIDMLWE--ISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQE 195
++ G + +I++L + G + C L GA P++ + F +Q
Sbjct: 362 LLDALEAGKGTQGDIEVLHQHVALSGPSGRSYCDLNTGALTPLRSGLERFGDIFTAHLQG 421
Query: 194 F 192
F
Sbjct: 422 F 422
>UniRef50_O27592 Cluster: NADP-reducing hydrogenase, subunit C; n=4;
cellular organisms|Rep: NADP-reducing hydrogenase,
subunit C - Methanobacterium thermoautotrophicum
Length = 630
Score = 78.6 bits (185), Expect = 2e-13
Identities = 36/124 (29%), Positives = 68/124 (54%)
Frame = -1
Query: 587 PRPPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQ 408
P +P + +T + D+D L +A +G+ ++V+ T +V+ + F + ESCG+
Sbjct: 414 PSGGCLPAELIDTGI-DYDSLTSAGAIMGSGGLVVLSDRTCMVELARYFLEFTQRESCGK 472
Query: 407 CTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRH 228
C PCR G M I+ V+G+ P++ D+L ++++ + ++C LG + PV +R+
Sbjct: 473 CVPCRVGTRQMLMILNDIVEGSGRPEDPDILRDVAESVRAASLCGLGQTSPNPVLTTLRY 532
Query: 227 FRPE 216
F E
Sbjct: 533 FEDE 536
>UniRef50_Q8ABI5 Cluster: NADH:ubiquinone oxidoreductase subunit;
n=91; cellular organisms|Rep: NADH:ubiquinone
oxidoreductase subunit - Bacteroides thetaiotaomicron
Length = 635
Score = 78.2 bits (184), Expect = 2e-13
Identities = 38/110 (34%), Positives = 66/110 (60%), Gaps = 1/110 (0%)
Frame = -1
Query: 542 MDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIM-FYKHESCGQCTPCREGVSWMNKI 366
+DFD L+AA + +G+ +IVMD+ D + ++AR + F ESCG+CTPCR G + ++
Sbjct: 451 IDFDNLLAAGSMMGSGGMIVMDED-DCMVSVARFYLDFTVEESCGKCTPCRIGNKRLLEL 509
Query: 365 IYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPE 216
+ + +G + K++D L + + I+ +C LG + PV + +FR E
Sbjct: 510 LNKITEGRGTEKDLDTLATLGRVIKDTALCGLGQTSPNPVLSTLDNFRDE 559
>UniRef50_A6GJI0 Cluster: Putative NADH dehydrogenase I chain F;
n=1; Plesiocystis pacifica SIR-1|Rep: Putative NADH
dehydrogenase I chain F - Plesiocystis pacifica SIR-1
Length = 503
Score = 78.2 bits (184), Expect = 2e-13
Identities = 36/111 (32%), Positives = 66/111 (59%)
Frame = -1
Query: 542 MDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKII 363
+DF GL + LG+A ++V++ + D+ A +F++ ESCGQC PCR G + I
Sbjct: 392 LDFGGLAKLGSMLGSAGVVVLNDTVDMAVAARWQQIFFEDESCGQCAPCRIGCRVQRQAI 451
Query: 362 YRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELE 210
+F+D A P+ + + E++ +++ +IC LG A+ P+Q +++F E +
Sbjct: 452 DKFLDARA-PESLGHVEEVAWEMDAGSICGLGMVASLPLQSAMKYFGEEFD 501
>UniRef50_Q47HE6 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
subunit:Respiratory-chain NADH dehydrogenase domain, 51
kDa subunit; n=1; Dechloromonas aromatica RCB|Rep: NADH
dehydrogenase (Ubiquinone), 24 kDa
subunit:Respiratory-chain NADH dehydrogenase domain, 51
kDa subunit - Dechloromonas aromatica (strain RCB)
Length = 632
Score = 77.8 bits (183), Expect = 3e-13
Identities = 37/125 (29%), Positives = 64/125 (51%)
Frame = -1
Query: 569 PKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCRE 390
P +C +FD ++ + A V + + D+ + + F++HESCG CTPCR
Sbjct: 472 PSGIC-IAEQEFDRVIGFEDIPTAGAFTVFNNTRDMFEVARNYVHFFQHESCGFCTPCRV 530
Query: 389 GVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELE 210
G S + ++ + +G SP + + ++++ ++ + C LG A PV I FRP E
Sbjct: 531 GTSLLKNLMDKLHNGVGSPYDFAEIEKLNQLLQSMSHCGLGHTACNPVLDTIERFRPAYE 590
Query: 209 RRMQE 195
RRM +
Sbjct: 591 RRMAQ 595
>UniRef50_Q9I0J7 Cluster: NADH-quinone oxidoreductase subunit F;
n=78; Bacteria|Rep: NADH-quinone oxidoreductase subunit
F - Pseudomonas aeruginosa
Length = 448
Score = 76.6 bits (180), Expect = 8e-13
Identities = 38/122 (31%), Positives = 65/122 (53%), Gaps = 2/122 (1%)
Frame = -1
Query: 530 GLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFV 351
G+ T +GT + +D S ++V + + F+ ESCG CTPCR+G+ W K++
Sbjct: 323 GIAKVGTRMGTGLAMAVDDSINMVSLLRNMEEFFARESCGWCTPCRDGLPWSVKLLRALE 382
Query: 350 DGNASPKEIDMLWEISKQI-EGHTICALGDGAAWPVQGLIRHFRPELERRM-QEFSAAHG 177
G P +++ L ++ + G T CA GA P+ +++FR E E + ++ SAA
Sbjct: 383 RGEGQPGDLETLEQLVNFLGPGKTFCAHAPGAVEPLGSALKYFRAEFEAGISRQPSAAPR 442
Query: 176 PS 171
P+
Sbjct: 443 PA 444
>UniRef50_Q835I8 Cluster: NAD-dependent formate dehydrogenase, beta
subunit, putative; n=1; Enterococcus faecalis|Rep:
NAD-dependent formate dehydrogenase, beta subunit,
putative - Enterococcus faecalis (Streptococcus
faecalis)
Length = 417
Score = 75.8 bits (178), Expect = 1e-12
Identities = 35/112 (31%), Positives = 62/112 (55%)
Frame = -1
Query: 545 LMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKI 366
L ++ L A S+G+ AI+VMD S ++V + + F+ HESCG+CTPCR G + + ++
Sbjct: 291 LYSYEDLWAHDLSVGSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRILEL 350
Query: 365 IYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELE 210
+ +F A+ ++ L ++ + + C LG A P++ + F E E
Sbjct: 351 LSKFNRNEATASDLPRLEKMLTHVTRLSACGLGQSVANPMKSALALFPEEFE 402
>UniRef50_O94500 Cluster: Iron sulfur cluster assembly protein; n=1;
Schizosaccharomyces pombe|Rep: Iron sulfur cluster
assembly protein - Schizosaccharomyces pombe (Fission
yeast)
Length = 452
Score = 74.5 bits (175), Expect = 3e-12
Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 1/129 (0%)
Frame = -1
Query: 587 PRPPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQ 408
P ++ KN CE V MDFD L A +SLGT ++IV++ I +++ FY +C
Sbjct: 320 PCSGILNKNQCEQVTMDFDSLKALDSSLGTGSVIVLNDHDQIFESLLNFAKFYSTNTCHT 379
Query: 407 CTPCREGVSWMNKIIYRFVDGNASPKEI-DMLWEISKQIEGHTICALGDGAAWPVQGLIR 231
C CR+GV + + + DG+A ++ DM + + C GD + + R
Sbjct: 380 CPVCRDGVEDVIETLKGLKDGHAHLSQLKDMFSKFNMPSSSKVFCGFGDSMRHQIHSIQR 439
Query: 230 HFRPELERR 204
+F ++ R
Sbjct: 440 NFPDQITFR 448
Score = 43.2 bits (97), Expect = 0.009
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = -3
Query: 666 LKELIERHAGGVTGGWDNLLAIIPGG 589
LK+LIE +AGGV GGW+ L+ I PGG
Sbjct: 294 LKDLIENYAGGVRGGWNKLVGIFPGG 319
>UniRef50_A5FSK8 Cluster: NADH dehydrogenase; n=3;
Dehalococcoides|Rep: NADH dehydrogenase -
Dehalococcoides sp. BAV1
Length = 417
Score = 73.3 bits (172), Expect = 7e-12
Identities = 36/111 (32%), Positives = 59/111 (53%)
Frame = -1
Query: 548 VLMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNK 369
+ +DF L A T LG+ A+IV++ T +V + + F+ E CG+C+ CREG +
Sbjct: 293 ISLDFKTLAKAGTMLGSGAVIVINSDTSMVNVASNVAHFFDEEGCGKCSICREGTRRAAE 352
Query: 368 IIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPE 216
I+ RF G + E++ L E+ + ++ C LG A IR+F+ E
Sbjct: 353 ILSRFSRGQGNRNELEWLLELHEVMKDTASCGLGQVALNVAASAIRNFKGE 403
>UniRef50_A6PMG7 Cluster: NADH dehydrogenase (Quinone) precursor;
n=1; Victivallis vadensis ATCC BAA-548|Rep: NADH
dehydrogenase (Quinone) precursor - Victivallis vadensis
ATCC BAA-548
Length = 573
Score = 72.1 bits (169), Expect = 2e-11
Identities = 39/131 (29%), Positives = 69/131 (52%)
Frame = -1
Query: 587 PRPPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQ 408
P IP + +T + D+D L +G+ +IV+ K +V+ + F ESCG+
Sbjct: 374 PSGGCIPVELFDTPV-DYDSLRKLGAIMGSGGMIVIGKDRCMVETARYFLDFTHRESCGK 432
Query: 407 CTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRH 228
CT CR G + M + + R V G S +++ +L ++ +I ++C LG A PV +R+
Sbjct: 433 CTFCRVGTTRMYETLERIVAGKGSMEDLALLEDLGPKIRMGSLCGLGQTAPNPVLATLRY 492
Query: 227 FRPELERRMQE 195
+R E E +++
Sbjct: 493 YRHEYEAHVRD 503
>UniRef50_A7IMB3 Cluster: NADH dehydrogenase; n=3;
Proteobacteria|Rep: NADH dehydrogenase - Xanthobacter
sp. (strain Py2)
Length = 422
Score = 70.5 bits (165), Expect = 5e-11
Identities = 37/113 (32%), Positives = 57/113 (50%)
Frame = -1
Query: 548 VLMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNK 369
V +DFD + ++ LGT A+IV+ + T IV+ +A + F+ SCGQC C+ G M +
Sbjct: 303 VALDFDSVKRRKSRLGTGAMIVISEGTSIVRKVAEYVAFFASGSCGQCPSCKCGTFQMAR 362
Query: 368 IIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELE 210
++ R G + L + + + G CAL DGA V+ F E E
Sbjct: 363 LLDRIATGRGVEADRQALDHLCRILPGSGRCALIDGAVTVVESSRHTFPDEYE 415
>UniRef50_O66841 Cluster: NADH-quinone oxidoreductase subunit F;
n=2; Aquifex aeolicus|Rep: NADH-quinone oxidoreductase
subunit F - Aquifex aeolicus
Length = 426
Score = 70.1 bits (164), Expect = 7e-11
Identities = 32/99 (32%), Positives = 56/99 (56%)
Frame = -1
Query: 503 GTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEI 324
GT +IV+ + DIV+A ++ FY+HE+CGQCTPCR G ++ + G A+ ++
Sbjct: 318 GTGTVIVLTEEDDIVEAALKIAEFYEHETCGQCTPCRVGCYEQANLLEKIYKGEATEQDW 377
Query: 323 DMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELER 207
+ +++ I+ +IC LG A ++ + F E E+
Sbjct: 378 EGFDFVNRNIQPTSICGLGAVAGRLIRQTLEKFPEEWEK 416
>UniRef50_Q9ZBV8 Cluster: Putative respiratory chain oxidoreductase;
n=2; Streptomyces|Rep: Putative respiratory chain
oxidoreductase - Streptomyces coelicolor
Length = 646
Score = 69.7 bits (163), Expect = 9e-11
Identities = 32/99 (32%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Frame = -1
Query: 542 MDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKII 363
+ F+G A T+LG+ ++ D + + + + R+ F++ ESCGQC PCR G + +
Sbjct: 535 LTFEGTREAGTTLGSGVVMAFDDTVPLPRLLLRIAEFFRDESCGQCVPCRVGTVRQEEAL 594
Query: 362 YRFVD--GNASPKEIDMLWEISKQIEGHTICALGDGAAW 252
+R D G A+ +I +L E+ + + +IC LG AW
Sbjct: 595 HRIADRTGAAAADDIALLREVGRAMRDASICGLGQ-TAW 632
>UniRef50_Q51696 Cluster: Putative uncharacterized protein ORF2;
n=1; Brevundimonas diminuta|Rep: Putative
uncharacterized protein ORF2 - Brevundimonas diminuta
(Pseudomonas diminuta)
Length = 401
Score = 68.9 bits (161), Expect = 2e-10
Identities = 39/117 (33%), Positives = 57/117 (48%)
Frame = -1
Query: 548 VLMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNK 369
V D L AA +SLG AAI S D+V A + F+ SC QC CR +
Sbjct: 285 VAFDSASLRAAGSSLGCAAITAYAASDDLVAAARQRAAFFASASCEQCPQCRMQTQMLLA 344
Query: 368 IIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQ 198
I+ + G A+ + + + I K G IC L D P+Q LI +F+ +++ RM+
Sbjct: 345 IVRQLESGKANARTLQQIPVIVKANAGKAICGLIDMPVAPIQSLIHYFKGDIDARMR 401
>UniRef50_A0NMW4 Cluster: NADH:ubiquinone oxidoreductase,
NADH-binding (51 kD) subunit; n=2; Proteobacteria|Rep:
NADH:ubiquinone oxidoreductase, NADH-binding (51 kD)
subunit - Stappia aggregata IAM 12614
Length = 626
Score = 68.1 bits (159), Expect = 3e-10
Identities = 33/90 (36%), Positives = 54/90 (60%)
Frame = -1
Query: 494 AIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDML 315
AIIV + ++++ + + F+ HESCG CTPCR G ++ K I +F G A+P++ID L
Sbjct: 492 AIIVFNGERNVLEIVEYYMSFFVHESCGYCTPCRVGNVFLQKAIQKFRKGLANPEDIDYL 551
Query: 314 WEISKQIEGHTICALGDGAAWPVQGLIRHF 225
++S I + C LG + PV +++F
Sbjct: 552 KDLSGTIIETSRCGLGMTSPNPVLTTLKNF 581
>UniRef50_A5N6F8 Cluster: NADH dehydrogenase-related protein; n=1;
Clostridium kluyveri DSM 555|Rep: NADH
dehydrogenase-related protein - Clostridium kluyveri DSM
555
Length = 320
Score = 66.9 bits (156), Expect = 6e-10
Identities = 35/108 (32%), Positives = 57/108 (52%)
Frame = -1
Query: 491 IIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLW 312
II+ D++ +V + + F E CG+C PCREGV M ++ +GNA ++I+ +
Sbjct: 154 IIIGDRNC-MVDVVKDYLNFLSKEFCGKCIPCREGVKRMLEMATDICEGNAKERDIENML 212
Query: 311 EISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQEFSAAHGPSK 168
++S I ++C LG A P+ IR+FR E E ++ G K
Sbjct: 213 QMSYVISQASLCNLGKRAQNPIMIAIRYFRDEFEEHLKNKRCRQGVCK 260
>UniRef50_UPI0000384AE3 Cluster: COG1894: NADH:ubiquinone
oxidoreductase, NADH-binding (51 kD) subunit; n=1;
Magnetospirillum magnetotacticum MS-1|Rep: COG1894:
NADH:ubiquinone oxidoreductase, NADH-binding (51 kD)
subunit - Magnetospirillum magnetotacticum MS-1
Length = 514
Score = 66.5 bits (155), Expect = 8e-10
Identities = 37/99 (37%), Positives = 57/99 (57%), Gaps = 1/99 (1%)
Frame = -1
Query: 506 LGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPK- 330
+G+AA++V + D+ L F+ HESCGQCTPCR G + + D ASP+
Sbjct: 422 IGSAAVVVFSQEDDLRAHALNLARFFAHESCGQCTPCRVGTA-------KAADLLASPRW 474
Query: 329 EIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEL 213
+ D+L ++++ + +IC LG A Q L+RHF PE+
Sbjct: 475 DEDLLNDLAQVMRDASICGLGQAAPNVWQSLLRHF-PEV 512
>UniRef50_A1WBG0 Cluster: NADH dehydrogenase (Quinone) precursor;
n=6; Proteobacteria|Rep: NADH dehydrogenase (Quinone)
precursor - Acidovorax sp. (strain JS42)
Length = 640
Score = 63.3 bits (147), Expect = 8e-09
Identities = 36/121 (29%), Positives = 66/121 (54%)
Frame = -1
Query: 575 LIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPC 396
++P + + V +DFD L +G+AA+IV+ + A ++ F+ HESCGQCTPC
Sbjct: 496 ILPARLSD-VPLDFDTLQPHGCFIGSAAVIVLSQHDRARDAALNMMRFFAHESCGQCTPC 554
Query: 395 REGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPE 216
R G + +++ A + D L ++++ + +IC LG A P++ + ++F E
Sbjct: 555 RVGTAKAAQLM------QAPLWDEDTLDDLAQVMADASICGLGQAAPNPIRCIHKYFAHE 608
Query: 215 L 213
+
Sbjct: 609 V 609
>UniRef50_Q603S6 Cluster: NAD-reducing hydrogenase, alpha subunit;
n=9; Proteobacteria|Rep: NAD-reducing hydrogenase, alpha
subunit - Methylococcus capsulatus
Length = 610
Score = 62.5 bits (145), Expect = 1e-08
Identities = 26/94 (27%), Positives = 50/94 (53%)
Frame = -1
Query: 494 AIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDML 315
+ IV D++ D++ F+ HESCG CTPCR G + + ++ + +G+ + ++ L
Sbjct: 479 SFIVFDRTRDVIGIARNFTHFFAHESCGFCTPCRVGTALLKNLLDKIAEGHGATGDLAEL 538
Query: 314 WEISKQIEGHTICALGDGAAWPVQGLIRHFRPEL 213
+ + + + C LG AA P+ + + PE+
Sbjct: 539 SRLGRFVRSASHCGLGQTAANPILSTLERY-PEI 571
>UniRef50_Q3A639 Cluster: NADH:ubiquinone oxidoreductase,
NADH-binding (51 kD) subunit; n=1; Pelobacter
carbinolicus DSM 2380|Rep: NADH:ubiquinone
oxidoreductase, NADH-binding (51 kD) subunit -
Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1)
Length = 571
Score = 61.3 bits (142), Expect = 3e-08
Identities = 38/130 (29%), Positives = 60/130 (46%)
Frame = -1
Query: 587 PRPPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQ 408
P IPK+ V +D++ L +G+ +I M V I F + E+CG+
Sbjct: 436 PSGGCIPKDYMH-VAVDYETLQEYGAIMGSGGLIAMSDDKSGVDIAKFFIDFCQDEACGK 494
Query: 407 CTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRH 228
C P REG M +I+ + G SP +I+ L + I +CAL A PV +R+
Sbjct: 495 CLPGREGTKQMLQILEKIDSGEGSPDDIETLKVLCGVIRKTALCALCKTAVNPVLSTLRY 554
Query: 227 FRPELERRMQ 198
F E + ++
Sbjct: 555 FPEEYQEAVK 564
>UniRef50_Q5P4U3 Cluster: Formate dehydrogenase, NAD(P) reducing,
beta subunit; n=41; Proteobacteria|Rep: Formate
dehydrogenase, NAD(P) reducing, beta subunit - Azoarcus
sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1))
Length = 585
Score = 60.5 bits (140), Expect = 5e-08
Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Frame = -1
Query: 575 LIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIM-FYKHESCGQCTP 399
++P + + L DFD L +G+AAI+V + D + +A M F+ HESCGQCTP
Sbjct: 461 MLPARLADMPL-DFDTLGEYGCFIGSAAIVVFSQH-DRARVLAENAMEFFAHESCGQCTP 518
Query: 398 CREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRP 219
CR G + +++ + +L E+ + +IC LG A P+Q ++R F
Sbjct: 519 CRVGTAKAAELM------KQPAWDAALLTELGTVMMDASICGLGQAAPNPMQSVLRFFPH 572
Query: 218 EL 213
E+
Sbjct: 573 EV 574
>UniRef50_A6LZW7 Cluster: 4Fe-4S ferredoxin, iron-sulfur binding
domain protein; n=1; Clostridium beijerinckii NCIMB
8052|Rep: 4Fe-4S ferredoxin, iron-sulfur binding domain
protein - Clostridium beijerinckii NCIMB 8052
Length = 414
Score = 60.5 bits (140), Expect = 5e-08
Identities = 31/112 (27%), Positives = 57/112 (50%)
Frame = -1
Query: 536 FDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYR 357
+ L+ T L + I V + +V + + ++ E+CG+C CREG+ + KII
Sbjct: 197 YSNLIGNGTMLEVSKIEVYNVDMCVVNWVTQKMLDNSKETCGKCVYCREGIYQLYKIIKD 256
Query: 356 FVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRM 201
+G +I++ ++S+ I+ T+C G A+ P+ I FR E E+ +
Sbjct: 257 ATEGKGKESDINLALQLSETIKIGTLCDFGRTASNPLYTAINKFRDEFEKHI 308
>UniRef50_Q18DS5 Cluster: NAD-reducing hydrogenase, alpha subunit;
n=1; Haloquadratum walsbyi DSM 16790|Rep: NAD-reducing
hydrogenase, alpha subunit - Haloquadratum walsbyi
(strain DSM 16790)
Length = 502
Score = 60.5 bits (140), Expect = 5e-08
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Frame = -1
Query: 509 SLGTAAII-VMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASP 333
+LGT I+ V+ + +V+ + F E+CG+C PCREG + + +++ DG P
Sbjct: 386 NLGTEGIVHVLSEDRCVVEFVGERAQFAAEENCGRCVPCREGTTQLAELLRSLYDGTYQP 445
Query: 332 KEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELE 210
+ ID E+ + + +IC G A P Q + F E E
Sbjct: 446 EAID---ELIRVMTTTSICEFGVNAGRPTQTALNAFESEFE 483
>UniRef50_Q7WMR8 Cluster: NAD-dependent formate dehydrogenase beta
subunit; n=107; Bacteria|Rep: NAD-dependent formate
dehydrogenase beta subunit - Bordetella bronchiseptica
(Alcaligenes bronchisepticus)
Length = 526
Score = 60.1 bits (139), Expect = 7e-08
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Frame = -1
Query: 548 VLMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNK 369
V +D++ V +G ++ D + D+ + + F ESCG+CTPCR G + +
Sbjct: 403 VPLDYEAYVQISAMVGHGGLVAFDDTVDMARMARYAMEFCAIESCGKCTPCRIGSTRGVE 462
Query: 368 IIYRFVDGNASPKE-IDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPE 216
I + V G ++ + +L ++ + ++CALG A +PV + HF PE
Sbjct: 463 TIDKIVAGGPQREQRVHLLRDLCDTMLAGSLCALGGMAPYPVLSALNHF-PE 513
>UniRef50_P77907 Cluster: Formate dehydrogenase beta subunit; n=2;
Moorella thermoacetica|Rep: Formate dehydrogenase beta
subunit - Moorella thermoacetica (Clostridium
thermoaceticum)
Length = 707
Score = 59.7 bits (138), Expect = 9e-08
Identities = 26/110 (23%), Positives = 52/110 (47%)
Frame = -1
Query: 506 LGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKE 327
+G ++V D + D++ A+ + ESCG+C PCR G + ++ R G P +
Sbjct: 40 IGWDGLVVTDPAVDLLAALQAYYQAVQGESCGRCVPCRVGTRVIYNVLVRIAGGEGLPSD 99
Query: 326 IDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQEFSAAHG 177
+D+L ++ + ++C LG A V + ++ L +++ G
Sbjct: 100 LDLLRRVAWIVRDGSLCELGQAGAKAVLDFLDYYSEALRPFLEDSGRVAG 149
>UniRef50_Q1V283 Cluster: NAD-dependent formate dehydrogenase beta
subunit; n=2; Candidatus Pelagibacter ubique|Rep:
NAD-dependent formate dehydrogenase beta subunit -
Candidatus Pelagibacter ubique HTCC1002
Length = 552
Score = 57.2 bits (132), Expect = 5e-07
Identities = 35/129 (27%), Positives = 62/129 (48%)
Frame = -1
Query: 587 PRPPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQ 408
P +IP E + +DF AA LG A+I+ + K +++ I L F ESCG+
Sbjct: 421 PLGGVIPITEIEKLNLDFQEFTAAGFMLGHASIVSIPKDFPMIEYIHHLFEFSAEESCGK 480
Query: 407 CTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRH 228
C P R G S+ K ++ + + +L E+ ++ +CAL P+ ++++
Sbjct: 481 CFPGRLG-SYRGKEMFDQAKNKTAKIPLKLLNELLVTMQKGCLCALCGAIPTPIMNILKY 539
Query: 227 FRPELERRM 201
F E++ M
Sbjct: 540 FGDEMKDDM 548
>UniRef50_A1SU84 Cluster: Hydrogenase, NADP-reducing subunit C; n=1;
Psychromonas ingrahamii 37|Rep: Hydrogenase,
NADP-reducing subunit C - Psychromonas ingrahamii
(strain 37)
Length = 588
Score = 57.2 bits (132), Expect = 5e-07
Identities = 27/100 (27%), Positives = 50/100 (50%)
Frame = -1
Query: 494 AIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDML 315
+ +V ++S DI++ F+ ESCG CTPCR G + + + G + ++D +
Sbjct: 463 SFMVFNQSRDILENALNFTHFFMQESCGFCTPCRVGTKLIYDLADKVATGQGARLDLDSI 522
Query: 314 WEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQE 195
+++ + G + C LG AA P+ + F +RM +
Sbjct: 523 KQLNHVMNGMSHCGLGQRAAEPLLETLEKFPEYFVKRMTD 562
>UniRef50_A1HDX5 Cluster: NADH dehydrogenase; n=4; Ralstonia
pickettii|Rep: NADH dehydrogenase - Ralstonia pickettii
12J
Length = 525
Score = 56.4 bits (130), Expect = 9e-07
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 2/128 (1%)
Frame = -1
Query: 587 PRPPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQ 408
P ++P + +T L ++ + ++G +I T I + +A+++ F ESCG+
Sbjct: 399 PLAGIVPPTLLDTRL-GYEEMQTIDCAVGHGGVIAFADDTSIPRIVAQVLRFGARESCGK 457
Query: 407 CTPCREGVSWMNKIIYRFVD--GNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLI 234
CTPC G I+ D N P + D + + ++C G G A VQ +
Sbjct: 458 CTPCHLG----TPILAAMADAAANRLPVDADRFRRLIDALAATSLCGHGRGLAEFVQSVR 513
Query: 233 RHFRPELE 210
RH+ EL+
Sbjct: 514 RHYPSELQ 521
>UniRef50_UPI0000E479C5 Cluster: PREDICTED: similar to mitochondrial
complex I subunit NDUFV1; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to mitochondrial
complex I subunit NDUFV1 - Strongylocentrotus purpuratus
Length = 319
Score = 56.0 bits (129), Expect = 1e-06
Identities = 24/28 (85%), Positives = 26/28 (92%)
Frame = -3
Query: 666 LKELIERHAGGVTGGWDNLLAIIPGGSS 583
LK LIE+HAGGV GGWDNLLA+IPGGSS
Sbjct: 82 LKFLIEKHAGGVEGGWDNLLAVIPGGSS 109
Score = 54.8 bits (126), Expect = 3e-06
Identities = 26/38 (68%), Positives = 30/38 (78%), Gaps = 3/38 (7%)
Frame = -3
Query: 666 LKELIERHAGGVTGGWDNLLAIIPGGS---STPAHTQE 562
LK LIE+HAGGV GGWDNLLA+IPGGS +TP +E
Sbjct: 39 LKFLIEKHAGGVEGGWDNLLAVIPGGSCNVNTPFTVEE 76
Score = 50.8 bits (116), Expect = 4e-05
Identities = 22/32 (68%), Positives = 26/32 (81%)
Frame = -3
Query: 675 ASXLKELIERHAGGVTGGWDNLLAIIPGGSST 580
++ LK LIE+HAGGV GGWDNLL + GGSST
Sbjct: 197 STPLKFLIEKHAGGVEGGWDNLLTVNSGGSST 228
Score = 48.4 bits (110), Expect = 2e-04
Identities = 20/32 (62%), Positives = 26/32 (81%)
Frame = -3
Query: 675 ASXLKELIERHAGGVTGGWDNLLAIIPGGSST 580
++ LK IE+HAGGV GGW++LL + PGGSST
Sbjct: 275 STPLKFFIEKHAGGVEGGWNDLLTVNPGGSST 306
Score = 38.7 bits (86), Expect = 0.19
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = -2
Query: 727 FNISGHVNTPCTVEEEMSIP 668
FNISG+VNTPCTVEE S P
Sbjct: 258 FNISGNVNTPCTVEESKSTP 277
>UniRef50_Q6NDH3 Cluster: Possible oxidoreductase; n=5;
Proteobacteria|Rep: Possible oxidoreductase -
Rhodopseudomonas palustris
Length = 673
Score = 54.4 bits (125), Expect = 3e-06
Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 3/124 (2%)
Frame = -1
Query: 539 DFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIY 360
+FD A + + V D + +V A+ + +SCG CTPCR G + +
Sbjct: 43 EFDEGNAIRAFIADRGFFVFDPTVSLVDALFHYLKAAAEQSCGACTPCRIGTVLVRDALD 102
Query: 359 RFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQE---FS 189
+ G + +D + + +QI ++C LG A + ++R FR +E+ + +
Sbjct: 103 QMRRGLDAALTLDDIVMLGEQIRQTSLCGLGQTCAVALLAVLRDFRERIEQELAQHRPIP 162
Query: 188 AAHG 177
A HG
Sbjct: 163 AQHG 166
>UniRef50_A6Q1P8 Cluster: FAD-dependent pyridine
nucleotide-disulphide oxidoreductase; n=1; Nitratiruptor
sp. SB155-2|Rep: FAD-dependent pyridine
nucleotide-disulphide oxidoreductase - Nitratiruptor sp.
(strain SB155-2)
Length = 680
Score = 51.6 bits (118), Expect = 2e-05
Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Frame = -1
Query: 524 VAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYK--HESCGQCTPCREGVSWMNKIIYRFV 351
+ ++ +G A I +M D+VK Y+ E+CG+C P R G + + +
Sbjct: 39 IDSKAFIGWAGIALMSDDVDVVKLATEYAKQYQVYSEACGRCAPGRWGGRILYDLFDKIA 98
Query: 350 DGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQEFSAA 183
G +++ L E+SK + + C +G P+ ++ HF E++ +Q A+
Sbjct: 99 RGEGEKSDVEHLKEVSKTMMETSKCEIGRTVPKPLLDILEHFSDEIDDLIQNKRAS 154
>UniRef50_Q1K3H5 Cluster: FAD-dependent pyridine
nucleotide-disulphide oxidoreductase; n=1;
Desulfuromonas acetoxidans DSM 684|Rep: FAD-dependent
pyridine nucleotide-disulphide oxidoreductase -
Desulfuromonas acetoxidans DSM 684
Length = 651
Score = 51.2 bits (117), Expect = 3e-05
Identities = 28/107 (26%), Positives = 56/107 (52%), Gaps = 1/107 (0%)
Frame = -1
Query: 533 DGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESC-GQCTPCREGVSWMNKIIYR 357
DG V A +G ++++D TD+V A + + + C G+CTP ++G M + R
Sbjct: 37 DGKVGA--FMGWDGVVLLDGETDVVAMAAEYMKRVQEKHCCGKCTPGKKGTRVMQDTLAR 94
Query: 356 FVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPE 216
+ G+ ++++++ + +EG C L +A PV +++FR +
Sbjct: 95 ILQGHGEERDLEIIENLKSLLEG-CKCTLCMTSAIPVLDTVKYFRDD 140
>UniRef50_Q73MB5 Cluster: Pyridine nucleotide-disulphide
oxidoreductase family protein; n=3; Bacteria|Rep:
Pyridine nucleotide-disulphide oxidoreductase family
protein - Treponema denticola
Length = 609
Score = 49.2 bits (112), Expect = 1e-04
Identities = 24/75 (32%), Positives = 42/75 (56%)
Frame = -1
Query: 422 ESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQ 243
++CG+C PCR G+ + I+ ++G ++ K +D++ E +K I CALG AA V
Sbjct: 50 QTCGKCAPCRIGLLQLKHILTDVLNGKSTMKTLDLIEETAKSIRETADCALGYEAADMVY 109
Query: 242 GLIRHFRPELERRMQ 198
I + R + E ++
Sbjct: 110 KSIIYCRDDFEEHIK 124
>UniRef50_Q2AFM4 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=2; Bacteria|Rep:
Respiratory-chain NADH dehydrogenase domain, 51 kDa
subunit - Halothermothrix orenii H 168
Length = 408
Score = 49.2 bits (112), Expect = 1e-04
Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Frame = -1
Query: 512 TSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKII-YRFVDGNAS 336
+SLG+ A++V+ + + + + F+ E+CG C PCREG ++ ++ + DG
Sbjct: 303 SSLGSGAVVVVSEDHYLPDLMLNVSRFFMDETCGTCFPCREGNRRVHLLLKNKISDGRFD 362
Query: 335 PKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEL 213
E ++ +I + I C LG + V ++ F EL
Sbjct: 363 RDEKKLISDIGRAIHLAARCGLGQTSLNFVTSVLNKFEDEL 403
>UniRef50_A1SNE6 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=1; Nocardioides sp. JS614|Rep:
Respiratory-chain NADH dehydrogenase domain, 51 kDa
subunit - Nocardioides sp. (strain BAA-499 / JS614)
Length = 412
Score = 48.8 bits (111), Expect = 2e-04
Identities = 30/109 (27%), Positives = 54/109 (49%)
Frame = -1
Query: 533 DGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRF 354
D + AA+T LG A ++V + + AR++ + +S +C PC G+ + + +
Sbjct: 290 DAMRAAETPLG-AGVVVAPRGCPVAFT-ARVVDYLAAQSARRCGPCLNGLPALARAVQEV 347
Query: 353 VDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELER 207
VDG P+ ++ L + + G CA DG A V+ ++ F E+ R
Sbjct: 348 VDGAGHPERVEGL---AALVTGRGACAHPDGTARLVRSMLATFPDEVTR 393
>UniRef50_A6QCF8 Cluster: FAD-dependent pyridine
nucleotide-disulphide oxidoreductase; n=3;
Epsilonproteobacteria|Rep: FAD-dependent pyridine
nucleotide-disulphide oxidoreductase - Sulfurovum sp.
(strain NBC37-1)
Length = 669
Score = 46.8 bits (106), Expect = 7e-04
Identities = 25/111 (22%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
Frame = -1
Query: 536 FDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKH--ESCGQCTPCREGVSWMNKII 363
+ G ++ +G + + D++ D V+ ++ Y+ E+CG+C P R G + ++
Sbjct: 35 YHGEKNSKAFIGWDGVAIFDENIDAVELASKYAAQYQEYSEACGRCAPGRWGGRILYDLL 94
Query: 362 YRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELE 210
+ G S +I L EISK + + C +G P+ L+ +++ + +
Sbjct: 95 DKIARGEGSHDDIAHLKEISKTMMATSKCEIGKTVPKPILDLMEYYKDQFD 145
>UniRef50_A5X3H0 Cluster: HtxX; n=1; Xanthobacter flavus|Rep: HtxX -
Xanthobacter flavus
Length = 496
Score = 45.6 bits (103), Expect = 0.002
Identities = 27/90 (30%), Positives = 43/90 (47%)
Frame = -1
Query: 527 LVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVD 348
L+A LGT IV + AR+ + ESCGQC PCR G + +I+
Sbjct: 396 LLAEGLRLGTGGAIVFGADDEPRAIAARMAAYLARESCGQCGPCRIGTAHAARIL----- 450
Query: 347 GNASPKEIDMLWEISKQIEGHTICALGDGA 258
P ++ +L +++ + ++CALG A
Sbjct: 451 AAPGPLDLPLLDDLATVMGEGSLCALGRNA 480
>UniRef50_Q5V638 Cluster: Putative NADH dehydrogenase I, F subunit;
n=1; Haloarcula marismortui|Rep: Putative NADH
dehydrogenase I, F subunit - Haloarcula marismortui
(Halobacterium marismortui)
Length = 507
Score = 44.8 bits (101), Expect = 0.003
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Frame = -1
Query: 506 LGTAAII-VMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPK 330
LGT ++ + D V+ + + F E+ G+C P REG + +++ DG+
Sbjct: 395 LGTNGVVELFDTGRCTVETVGKRARFASMENSGRCVPGREGTKQLAELLRDIYDGSF--- 451
Query: 329 EIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPE 216
E D + E+S+ + + C G A PV I F PE
Sbjct: 452 ENDKIRELSRVMRQSSNCQTGAHAPRPVTTAIDEFEPE 489
>UniRef50_Q74FU5 Cluster: Fe(III) reductase, beta subunit; n=6;
Geobacter|Rep: Fe(III) reductase, beta subunit -
Geobacter sulfurreducens
Length = 672
Score = 44.4 bits (100), Expect = 0.004
Identities = 24/107 (22%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Frame = -1
Query: 533 DGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHE-SCGQCTPCREGVSWMNKIIYR 357
DG +G II+ D D+ A + + + CG+CTP ++G + ++
Sbjct: 34 DGERQIAAFMGWDGIILYDLKVDVPAMAAEYMKRVQTQYCCGKCTPGKKGTKVLADVLAA 93
Query: 356 FVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPE 216
++G A+ ++D + +++ + + C L + PV ++HFR +
Sbjct: 94 IIEGRATEADLDTIDDLADLLT-NCKCTLCQSSTIPVLDAVKHFRED 139
>UniRef50_Q65UM2 Cluster: GltD protein; n=2; Pasteurellaceae|Rep:
GltD protein - Mannheimia succiniciproducens (strain
MBEL55E)
Length = 612
Score = 44.4 bits (100), Expect = 0.004
Identities = 19/78 (24%), Positives = 39/78 (50%)
Frame = -1
Query: 422 ESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQ 243
++CG+C PCR+G+ ++ ++ + G + + E+++ I + CA+G A +
Sbjct: 50 QTCGKCVPCRDGIPHLSFLLRDILAGEGDDSTMRQIRELAEMIRDGSDCAIGYQPAIEIL 109
Query: 242 GLIRHFRPELERRMQEFS 189
I F+ E E + S
Sbjct: 110 DSIEEFKEEYESHIHNKS 127
>UniRef50_Q9ACZ1 Cluster: Putative oxidoreductase; n=3;
Streptomyces|Rep: Putative oxidoreductase - Streptomyces
coelicolor
Length = 525
Score = 44.0 bits (99), Expect = 0.005
Identities = 25/107 (23%), Positives = 54/107 (50%)
Frame = -1
Query: 533 DGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRF 354
+ L A +LG AI+ + + T + ++ + ES GQC PC G+ + +
Sbjct: 289 NSLDAVGGALGAGAILPISQETCPLGEALQVAKWLAEESAGQCGPCYLGLPAAARGLEDI 348
Query: 353 VDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEL 213
++G P ++ L ++++ ++ C+ DG+A ++ +I+ F +L
Sbjct: 349 LNG-GGPAALETLKQVARNVKRRGACSHPDGSAMFLESMIKVFTDDL 394
>UniRef50_A0K164 Cluster: NADH dehydrogenase; n=2;
Actinomycetales|Rep: NADH dehydrogenase - Arthrobacter
sp. (strain FB24)
Length = 566
Score = 44.0 bits (99), Expect = 0.005
Identities = 26/93 (27%), Positives = 43/93 (46%)
Frame = -1
Query: 509 SLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPK 330
+LG A I+ D + + L F ESCGQC+PCR G +W + + D +P
Sbjct: 469 ALGHAGIVAFDDRLSGEQVLRNLWDFAAAESCGQCSPCRVG-TWRGRALAELPD---APD 524
Query: 329 EIDMLWEISKQIEGHTICALGDGAAWPVQGLIR 231
++ + + ++CA G V+ L+R
Sbjct: 525 VGSERGDVLRTMAAGSLCAFGRRVPAAVRSLVR 557
>UniRef50_Q4AEJ7 Cluster: Hydrogen dehydrogenase; n=1; Chlorobium
phaeobacteroides BS1|Rep: Hydrogen dehydrogenase -
Chlorobium phaeobacteroides BS1
Length = 497
Score = 43.2 bits (97), Expect = 0.009
Identities = 24/93 (25%), Positives = 45/93 (48%)
Frame = -1
Query: 503 GTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEI 324
G + I+ + + + + F+ ESCG C+ CR + + + + ++G ++I
Sbjct: 406 GGSMIVFNNTRNLLTDVVLNFMNFFIEESCGSCSTCRNMPFVLREKLLKIIEGRGVKQDI 465
Query: 323 DMLWEISKQIEGHTICALGDGAAWPVQGLIRHF 225
+ E +K + + C LG AA PV IR+F
Sbjct: 466 KDMIEWAK-VLNVSRCGLGQTAANPVVSSIRNF 497
>UniRef50_Q1PZQ6 Cluster: Similar to NADH dehydrogenase I chain F
(1st module) EC: 1.6.5.3; n=1; Candidatus Kuenenia
stuttgartiensis|Rep: Similar to NADH dehydrogenase I
chain F (1st module) EC: 1.6.5.3 - Candidatus Kuenenia
stuttgartiensis
Length = 675
Score = 43.2 bits (97), Expect = 0.009
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 3/113 (2%)
Frame = -1
Query: 539 DFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIY 360
+FD + LG+A IV+D + I + + F ESC QC C+ G+ + I
Sbjct: 518 EFDAFQMIGSGLGSAGFIVLDNAASIPRVTQAVARFLYVESCNQCPACKAGLRTASHGID 577
Query: 359 RFVDG---NASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELE 210
+ + +D + E + C L A + GL++ FR E E
Sbjct: 578 ELLQHLHLHDDRAGLDWIMEGAHSAPQANRCFLPAQGAKLIPGLVQSFREEFE 630
>UniRef50_O96948 Cluster: Hydrogenase; n=14; Eukaryota|Rep:
Hydrogenase - Nyctotherus ovalis
Length = 1206
Score = 41.1 bits (92), Expect = 0.035
Identities = 21/76 (27%), Positives = 34/76 (44%)
Frame = -1
Query: 494 AIIVMDKSTDIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDML 315
++++ + S D+ K + F ESC QC PCR+G ++ D S + L
Sbjct: 1102 SVVLFNSSCDLGKIYENKLKFMAEESCKQCVPCRDGSYIFHRAFKELRDTGKSSYNMRAL 1161
Query: 314 WEISKQIEGHTICALG 267
S+ +ICA G
Sbjct: 1162 AVASESAARSSICAHG 1177
>UniRef50_Q67JR5 Cluster: NADH dehydrogenase subunit; n=1;
Symbiobacterium thermophilum|Rep: NADH dehydrogenase
subunit - Symbiobacterium thermophilum
Length = 394
Score = 37.5 bits (83), Expect = 0.43
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = -1
Query: 578 PLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARL-IMFYKHESCGQCT 402
PL P + V + ++ L A +SLG +A++V ++ + + R + SCGQC
Sbjct: 279 PLRPDEL--DVPLTYEDLAALGSSLGNSAVVVFRRADATLPDLVRENVALLARGSCGQCR 336
Query: 401 PCREG 387
CREG
Sbjct: 337 GCREG 341
>UniRef50_UPI00006DD0D0 Cluster: hypothetical protein
Bmal2_03001021; n=1; Burkholderia mallei 2002721280|Rep:
hypothetical protein Bmal2_03001021 - Burkholderia
mallei 2002721280
Length = 340
Score = 37.1 bits (82), Expect = 0.57
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = -2
Query: 328 KSTCCGKFRNKSKGTRSALWATEPRGRCRDSYVTSGPSSSDACRSSRPRTGRAKPSACTS 149
+ TCC + R S + RC S G S S +CRS+R + ++ S+CTS
Sbjct: 271 RRTCCRRTRMSSPCCSRRSRSASASARCCASGCRGGASRSGSCRSARSASACSR-SSCTS 329
Query: 148 SAIRAERQ 125
A R R+
Sbjct: 330 RATRCPRR 337
>UniRef50_Q8CAM2 Cluster: Adult male hypothalamus cDNA, RIKEN
full-length enriched library, clone:A230020J21
product:hypothetical protein, full insert sequence; n=2;
Mus musculus|Rep: Adult male hypothalamus cDNA, RIKEN
full-length enriched library, clone:A230020J21
product:hypothetical protein, full insert sequence - Mus
musculus (Mouse)
Length = 278
Score = 37.1 bits (82), Expect = 0.57
Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Frame = -3
Query: 606 AIIPGGSSTPAHTQERLRDSVDGLRRSSSRADLPGHGGHHC-HGQ-VN*HREG-DRSTHH 436
A+ PG + A Q+R +++ R D GH GHH HGQ V+ R H
Sbjct: 64 ALDPGSQAVEAGAQQRREPQASRVQQPGGRED-EGHVGHHVHHGQPVDVQRRHLVEVLEH 122
Query: 435 VLQARVLRPVHSLPRRCLL-DEQDYIQIRRW*C 340
V A VL P+ + +R DEQ + RR C
Sbjct: 123 VADAAVLDPLEGVHQRVKAEDEQHHEAPRRQRC 155
>UniRef50_Q2GRR4 Cluster: Putative uncharacterized protein; n=2;
Sordariomycetes|Rep: Putative uncharacterized protein -
Chaetomium globosum (Soil fungus)
Length = 322
Score = 35.9 bits (79), Expect = 1.3
Identities = 27/90 (30%), Positives = 39/90 (43%)
Frame = -1
Query: 647 GTRAESPAXGTTCSPSYQEAPRPPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKST 468
G A +PA + QEA P + + ET+ D + T + T + VM +
Sbjct: 173 GGAAPAPAAKRSRIFGRQEATPPAVAATTLLETIFSVVDQIAVPGTKVTTPPL-VMSEVV 231
Query: 467 DIVKAIARLIMFYKHESCGQCTPCREGVSW 378
D++KA A F + PC EGVSW
Sbjct: 232 DVLKANA----FQIYAGSLTTPPCSEGVSW 257
>UniRef50_UPI0000E8082E Cluster: PREDICTED: similar to KIAA1619
protein; n=1; Gallus gallus|Rep: PREDICTED: similar to
KIAA1619 protein - Gallus gallus
Length = 823
Score = 35.5 bits (78), Expect = 1.7
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = -3
Query: 591 GSSTPAHTQERLRDSVDGLRRSSSRADLPGHGG-HHCHGQ 475
GS P QERLR VDGL +++ LPGH G + C+G+
Sbjct: 575 GSEVPGTGQERLRVGVDGLLVTNT---LPGHSGEYRCYGE 611
>UniRef50_UPI0000DB7593 Cluster: PREDICTED: similar to NFAT
CG11172-PA; n=1; Apis mellifera|Rep: PREDICTED: similar
to NFAT CG11172-PA - Apis mellifera
Length = 1265
Score = 35.5 bits (78), Expect = 1.7
Identities = 20/62 (32%), Positives = 24/62 (38%)
Frame = -2
Query: 319 CCGKFRNKSKGTRSALWATEPRGRCRDSYVTSGPSSSDACRSSRPRTGRAKPSACTSSAI 140
CC + + G AT R CR TSG + +SR G A S TS A
Sbjct: 1001 CCSDAASATSGAGCCACATTSRASCRSGSATSGTGGTTGAAASRSTRGAACASCPTSCAT 1060
Query: 139 RA 134
A
Sbjct: 1061 SA 1062
>UniRef50_A6DNW3 Cluster: Putative uncharacterized protein; n=1;
Lentisphaera araneosa HTCC2155|Rep: Putative
uncharacterized protein - Lentisphaera araneosa HTCC2155
Length = 953
Score = 35.1 bits (77), Expect = 2.3
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = -3
Query: 588 SSTPAHTQERLRDSVDGLRRSSSRADLP-GHGGHHCHGQVN*HREGDRSTHHVLQARVLR 412
S P + L S DG + AD HGG+H H ++ + +G ++ H +QA V+
Sbjct: 453 SDKPLPALKGLSISKDGKAITYKNADASHSHGGYHPHFLIHKNPQGWKADHKKMQALVMT 512
Query: 411 PVHSL 397
P H++
Sbjct: 513 PHHNM 517
>UniRef50_Q0J124 Cluster: Os09g0467700 protein; n=1; Oryza sativa
(japonica cultivar-group)|Rep: Os09g0467700 protein -
Oryza sativa subsp. japonica (Rice)
Length = 168
Score = 34.7 bits (76), Expect = 3.0
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = -3
Query: 597 PGGSSTPAHTQERLRDSVDGLRRSSSRADLPGHGGH 490
PGG +H Q R R + L S R DLPG GGH
Sbjct: 46 PGGGGGGSHGQIRRRQLLPPLLASLPRVDLPGGGGH 81
>UniRef50_Q4UGM9 Cluster: Theileria parva Tpr-related protein,
putative; n=1; Theileria annulata|Rep: Theileria parva
Tpr-related protein, putative - Theileria annulata
Length = 617
Score = 34.3 bits (75), Expect = 4.0
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = -1
Query: 554 ETVLMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYK 426
E V+ +F+ LV + + LGT IV + TD+ K + I FYK
Sbjct: 301 ENVINNFNSLVDSYSKLGTNKSIVKTQFTDLQKVYSEAIYFYK 343
>UniRef50_Q4Q2I6 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 870
Score = 34.3 bits (75), Expect = 4.0
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +2
Query: 140 YCTTSTGARLCSARARPRTPACVARARAGSDV*VPAPATRLRRPERRSCALRFVSKFPT 316
Y T R S A+ R A +A R + +P+P T PE R CA+ VS++ T
Sbjct: 778 YLTALERKRKQSKEAQERRTALIASLREHHALQIPSPVTLPPLPEDRPCAMGLVSQYGT 836
>UniRef50_UPI0000E816CC Cluster: PREDICTED: hypothetical protein;
n=1; Gallus gallus|Rep: PREDICTED: hypothetical protein
- Gallus gallus
Length = 184
Score = 33.5 bits (73), Expect = 7.0
Identities = 21/59 (35%), Positives = 23/59 (38%)
Frame = -2
Query: 316 CGKFRNKSKGTRSALWATEPRGRCRDSYVTSGPSSSDACRSSRPRTGRAKPSACTSSAI 140
CG G R A T P G C VTS P RS+R PSA S A+
Sbjct: 32 CGHMAASGPGGRGAARTTLPMGHCGRWAVTSPPIGQRRPRSARGLVAAFGPSASLSGAV 90
>UniRef50_A7ATC7 Cluster: Variant erythrocyte surface antigen-1,
alpha subunit; n=27; Babesia bovis|Rep: Variant
erythrocyte surface antigen-1, alpha subunit - Babesia
bovis
Length = 1378
Score = 33.5 bits (73), Expect = 7.0
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = -2
Query: 337 HRKKSTCCGKFRNKSKGTRSALWAT-EPRGRCRDSYVTSGPSSSDACR 197
H K CCG N + G R G+CR+ V G S D+CR
Sbjct: 157 HGKFKCCCGNNGNHNGGLRCCKGQNGADGGKCRNGKVCDGSSKGDSCR 204
>UniRef50_A6GNP4 Cluster: Cellulose synthase operon protein C; n=1;
Limnobacter sp. MED105|Rep: Cellulose synthase operon
protein C - Limnobacter sp. MED105
Length = 1322
Score = 33.1 bits (72), Expect = 9.2
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -1
Query: 632 SPAXGTTCSPSYQEAPRPPL-IPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDK 474
SPA + +PS P PPL P + + + LV QTSLGT I V K
Sbjct: 893 SPAVRPSQAPSSGYVPPPPLNAPGDRISVLQNELRSLVKPQTSLGTGGIFVRSK 946
>UniRef50_A1SFH1 Cluster: Pentapeptide repeat protein; n=1;
Nocardioides sp. JS614|Rep: Pentapeptide repeat protein
- Nocardioides sp. (strain BAA-499 / JS614)
Length = 885
Score = 33.1 bits (72), Expect = 9.2
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = +2
Query: 170 CSARARPRTPACVARARAGSDV*VPAPATRLRRPERRSCALRFVSKFPTACRFLSVKHYH 349
C+ + RP P R + AP RL P + ALR + + P++ R S H+H
Sbjct: 603 CAIKGRPTWPEKAVLDRLADEAVAKAPEFRLAAPSELTDALRAL-QAPSSTRITSTTHFH 661
>UniRef50_Q00TP5 Cluster: FOG: Ankyrin repeat; n=1; Ostreococcus
tauri|Rep: FOG: Ankyrin repeat - Ostreococcus tauri
Length = 423
Score = 33.1 bits (72), Expect = 9.2
Identities = 21/63 (33%), Positives = 28/63 (44%)
Frame = -1
Query: 665 SRSSLRGTRAESPAXGTTCSPSYQEAPRPPLIPKNVCETVLMDFDGLVAAQTSLGTAAII 486
S S RGT S G T + + PP+IP +V + D G A + G+ I
Sbjct: 128 SDHSWRGTSGLSKPPGWTSHRRTRRSQGPPVIPPDVHPDSVTDVHGSTALMWAAGSGKIS 187
Query: 485 VMD 477
VMD
Sbjct: 188 VMD 190
>UniRef50_P38201 Cluster: Uncharacterized protein YBL029W; n=2;
Saccharomyces cerevisiae|Rep: Uncharacterized protein
YBL029W - Saccharomyces cerevisiae (Baker's yeast)
Length = 376
Score = 33.1 bits (72), Expect = 9.2
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = -2
Query: 307 FRNKSKGTRSALWATEPRGRCRDSYVTSGPSSSDACRSSRPR---TGRAKPSACTSSAIR 137
F + S + S + ++ R C DSY S PSSS++ + S R G AK S
Sbjct: 230 FSSSSSSSESTVSSSRKRKPCHDSYTHSSPSSSESKKISDSRLSAEGLAKVLNLESPEEA 289
Query: 136 AERQLFTLRVSKEPL 92
+R+ F L + + L
Sbjct: 290 LKRERFILGIFQNEL 304
>UniRef50_P28739 Cluster: Kinesin-like protein klpA; n=8;
Eurotiomycetidae|Rep: Kinesin-like protein klpA -
Emericella nidulans (Aspergillus nidulans)
Length = 763
Score = 33.1 bits (72), Expect = 9.2
Identities = 25/71 (35%), Positives = 30/71 (42%)
Frame = -2
Query: 331 KKSTCCGKFRNKSKGTRSALWATEPRGRCRDSYVTSGPSSSDACRSSRPRTGRAKPSACT 152
K T + N S TRSA A+ PRG S TSG + S RP G A P T
Sbjct: 67 KAHTRANSYANSSTLTRSASAASRPRGPLSSS--TSGRPKTSMSTSRRP-NGHALPRPAT 123
Query: 151 SSAIRAERQLF 119
S E + +
Sbjct: 124 SLDTHQEERSY 134
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 770,066,215
Number of Sequences: 1657284
Number of extensions: 15997838
Number of successful extensions: 57454
Number of sequences better than 10.0: 95
Number of HSP's better than 10.0 without gapping: 53318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57338
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 75833093035
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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