Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_F06
(857 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1481 + 26860051-26860104,26861114-26861143,26861714-26863174 208 6e-54
09_04_0371 - 17020539-17020607,17020697-17020747,17020888-170210... 31 1.2
03_03_0107 + 14504065-14504448,14504545-14504922,14506011-145066... 30 2.1
02_02_0581 + 11770511-11770527,11770754-11771612,11771652-117717... 30 2.1
10_03_0002 - 6858257-6861205 30 2.7
09_04_0082 + 14408962-14409436,14413356-14413780,14414067-14414528 29 3.6
10_08_1024 + 22371260-22371481,22371514-22372188,22372291-223732... 29 6.3
07_01_0999 + 8426276-8426447,8426801-8426961 29 6.3
01_06_1475 + 37634831-37636297 29 6.3
11_06_0202 - 21184217-21184503,21184622-21184982 28 8.3
07_01_0070 + 515247-515397,516198-516265,516360-518456,518750-51... 28 8.3
01_06_1228 - 35541160-35541729 28 8.3
>07_03_1481 + 26860051-26860104,26861114-26861143,26861714-26863174
Length = 514
Score = 208 bits (507), Expect = 6e-54
Identities = 93/128 (72%), Positives = 108/128 (84%)
Frame = -1
Query: 578 PLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQCTP 399
PL+PK++C+ VLMD+D L A Q+ LGTAA+IVMDKSTD+V AIARL FYKHESCGQCTP
Sbjct: 376 PLLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTP 435
Query: 398 CREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRP 219
CREG W+ I+ R GNA +EIDML E++KQIEGHTICALGD AAWPVQGLIRHFRP
Sbjct: 436 CREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRP 495
Query: 218 ELERRMQE 195
ELERR++E
Sbjct: 496 ELERRIRE 503
Score = 60.9 bits (141), Expect = 1e-09
Identities = 26/30 (86%), Positives = 27/30 (90%)
Frame = -3
Query: 666 LKELIERHAGGVTGGWDNLLAIIPGGSSTP 577
LKELIE+H GGV GGWDNLLAIIPGGSS P
Sbjct: 347 LKELIEKHCGGVRGGWDNLLAIIPGGSSVP 376
Score = 41.5 bits (93), Expect = 8e-04
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = -2
Query: 727 FNISGHVNTPCTVEEEMSIP 668
F +SGHVN PCTVEEEMSIP
Sbjct: 327 FCVSGHVNKPCTVEEEMSIP 346
>09_04_0371 -
17020539-17020607,17020697-17020747,17020888-17021058,
17023296-17023404,17023570-17023676,17024429-17024640,
17024805-17024952
Length = 288
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = -1
Query: 434 FYKHESCGQCTPCREGVSW--MNKIIYRFVDGNASPKEIDMLWEISKQIE 291
+Y+++ PC EGV W M+KI G+AS ++ID+L ++ +E
Sbjct: 226 YYRYDGSLTTPPCTEGVIWTIMSKI------GDASKEQIDLLKTVATTVE 269
>03_03_0107 +
14504065-14504448,14504545-14504922,14506011-14506619,
14507110-14507237,14507829-14507832
Length = 500
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -1
Query: 293 EGHTICALGDGAAWPVQGLIRHFRPELERRMQEFSAAHGPSKAERL 156
EG T+C + A PV+ + R P++ R + E +HG S+ E L
Sbjct: 148 EGRTMCKVAAKTA-PVRRIERAVDPDIARLLDETDVSHGGSEDEGL 192
>02_02_0581 +
11770511-11770527,11770754-11771612,11771652-11771749,
11772903-11773631,11775159-11775231,11775698-11776066,
11777009-11777038
Length = 724
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = -2
Query: 322 TCCGKFRNKSKGTRSALWATEPRGRCRDSYVTSGPSSSDACRSSRPRTGRAKPSACTSSA 143
T + R K K TRS L + +G + GPS++DA + P +G A +A +
Sbjct: 632 TARSEMRGKRKRTRSKLQQSRGQGCWPIAIHVIGPSTADARHPTAPLSGAAAAAAAIQAT 691
Query: 142 IRA 134
A
Sbjct: 692 TAA 694
>10_03_0002 - 6858257-6861205
Length = 982
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -2
Query: 679 MSIPAQGAH*EARGRSHRRXGQPARHHT-RRLLDPRSYPR 563
+SI G++ +RG R P HH RR+ PRS PR
Sbjct: 350 LSITGAGSNRRSRGHDERSVHSPPDHHRERRVERPRSPPR 389
>09_04_0082 + 14408962-14409436,14413356-14413780,14414067-14414528
Length = 453
Score = 29.5 bits (63), Expect = 3.6
Identities = 22/89 (24%), Positives = 39/89 (43%)
Frame = -2
Query: 349 MVMLHRKKSTCCGKFRNKSKGTRSALWATEPRGRCRDSYVTSGPSSSDACRSSRPRTGRA 170
+++L +K+ST R G+R + RG S+ + G +S + S+ A
Sbjct: 352 VIILSKKQSTLEEPTRPGVPGSRYRRRSYGTRGGGGGSHFSVGSTSGTSSPSTSTTASHA 411
Query: 169 KPSACTSSAIRAERQLFTLRVSKEPLYRE 83
SA +++ T+R PL+RE
Sbjct: 412 TTSAASNAMTTTTSSTHTMRSQGLPLHRE 440
>10_08_1024 +
22371260-22371481,22371514-22372188,22372291-22373236,
22389377-22389552
Length = 672
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -2
Query: 688 EEEMSIPAQGAH*EARGRSHRRXGQ-PARHHTRRLLDPRSYPR 563
+ +S+ G+ +RG R P RH RR+ PRS PR
Sbjct: 168 QPSLSVTGTGSSRRSRGHDERSVHSLPERHRERRVERPRSPPR 210
>07_01_0999 + 8426276-8426447,8426801-8426961
Length = 110
Score = 28.7 bits (61), Expect = 6.3
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +1
Query: 475 LSMTMMAAVPREVCAATRPSKSINTVSQTFLGMSGGRGASWYDGEQVVPXAGDS 636
+S+ ++A R C T+ V +T +G GG YDGE VV GDS
Sbjct: 41 ISIALLAGARR--CVTTKAKGREVRVDETRIGNGGG---GTYDGEGVVGCIGDS 89
>01_06_1475 + 37634831-37636297
Length = 488
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -2
Query: 280 SALWATEPRGRCRDSYVTSGPSSSDACRSSRPRTGRAKPSAC 155
+A AT P R + V P + DAC+ P+T A S C
Sbjct: 126 TACGATAPFNPVRSTTVADVPCTDDACQQFAPQTCGAGASEC 167
>11_06_0202 - 21184217-21184503,21184622-21184982
Length = 215
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 671 PXSRSSLRGTRAESPAXGTTCSPSYQEAPRPPLIP 567
P S L + A +PA T +PS +AP+P P
Sbjct: 137 PPSAGKLAESPAATPAQSPTAAPSLPQAPKPSSPP 171
>07_01_0070 +
515247-515397,516198-516265,516360-518456,518750-518900,
519883-520638,520990-521164,521303-521387
Length = 1160
Score = 28.3 bits (60), Expect = 8.3
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = -3
Query: 675 ASXLKELIERHAGGVTGGWDNLLAIIPGGSSTPAHTQERL-RDSVDGLRRSSSRADLPGH 499
A L ++ E A G GG L + S+ + +++ R++V+ +SSSRA P H
Sbjct: 538 ADLLSDVTEDSAVGPLGGLSELPQLRTANSADKRKSSKKVTREAVEQHTKSSSRAPTPQH 597
>01_06_1228 - 35541160-35541729
Length = 189
Score = 28.3 bits (60), Expect = 8.3
Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Frame = -2
Query: 325 STCCGKFRNKSKGTRSALWATEPRGRCRDSYVTSGPSSSDACRSS-RPRTGRAKPSACTS 149
S C G+F K L C D+++ S P S CRSS P KP S
Sbjct: 128 SICLGEFEEGEKVKALPLCGHGFHPECVDAWLRSRP-SCPLCRSSLLPAAATTKPDVAGS 186
Query: 148 SAI 140
A+
Sbjct: 187 DAV 189
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,954,794
Number of Sequences: 37544
Number of extensions: 492474
Number of successful extensions: 1788
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1785
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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