Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_F05
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz...    48   2e-06
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...    31   0.16 
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    27   2.6  
SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding...    27   4.5  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    27   4.5  
SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces po...    26   6.0  
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    26   7.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   7.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   7.9  

>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 322

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
 Frame = -3

Query: 525 GWWKYEFCYGKHVLQYHI------DRAGEKTTVMLGRFDEKAHLDWIKDNKGKAPKPIDQ 364
           G+W Y++ YG+HV QYH+      D+       +LG          +++N   A   ++ 
Sbjct: 132 GYWTYDYVYGQHVRQYHLEPQQGSDKVLANPMYILGTAPNTQTKKNLEEN--WAIGFVEG 189

Query: 363 RISISHFYSNGDVCDKTGRPRQTEVKLKCLENSSSP 256
           +  +   + NG +CD T RPR   +  +C  NS +P
Sbjct: 190 KAYLQTTFRNGTMCDITKRPRHVILSYECSTNSDTP 225


>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -3

Query: 483 QYHIDRAGEKTTVMLGRFDEKAHLDWIKDNKGKAPKPIDQRISISHFY 340
           QYH D   +K  + +G + +     WI     KA K ++++ S +H Y
Sbjct: 23  QYHQDEDPKKVNMSVGAYRDDTGKPWILPAVKKASKIVEEQASFNHEY 70


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = +3

Query: 570 TGESSVIGGGRLSTLGTGFGGSDVISSS-SPAGCSSNFKWVSPSFSNFRLSNCK 728
           TGE+ +        L +   G      S SP   SSNF     S +NF+  NCK
Sbjct: 180 TGENILSASSSEENLNSNRNGDPKFRFSVSPWISSSNFNPYEASLANFQSDNCK 233


>SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding
           protein Ssb2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 279

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 159 VGQRQYVAYQRRFHAQYVMTSFRFQQVQGRLELDSTNSLD 278
           VGQ  +V   R  HAQ   T+++ +   G +E+     +D
Sbjct: 77  VGQVTFVGVLRNIHAQTTNTTYQIEDGTGMIEVRHWEHID 116


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1208

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/39 (30%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -1

Query: 167  LADENGL-IKTVREALEKKKERSEAVDDVSDKNVPKYEN 54
            + DE+ L +KT+REAL+ K    + +  + ++N  +Y++
Sbjct: 1029 VTDESQLMLKTLREALQSKTNNIDHLSTILERNRKEYKS 1067


>SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 439

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = -1

Query: 647 GYDVRPTEASTERRQAPSANHG*FSRTSLP*TGKIV 540
           GYDVRPT A T      +         SLP  GKIV
Sbjct: 147 GYDVRPTIAITRAHLQVTEIQRSVENGSLPIDGKIV 182


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -2

Query: 391 RESSETYRSKNFNIAFLFERRRLRQNRPTP 302
           RES +T    NF +A++FE +R + + P+P
Sbjct: 324 RESGDT-ACLNFALAWMFEFKRSQYSNPSP 352


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 631 PPKPVPSVDKRPPPITDDSPV 569
           PP+  PS  ++PPP++    V
Sbjct: 365 PPRSAPSTGRQPPPLSSSRAV 385


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 631  PPKPVPSVDKRPPPITDDSP 572
            PP P+PS D  P P+   +P
Sbjct: 1022 PPVPLPSADAPPIPVPSTAP 1041


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,353,815
Number of Sequences: 5004
Number of extensions: 73036
Number of successful extensions: 248
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)