Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_E21
         (817 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25 |Schiz...    27   3.2  
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch...    27   4.2  
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c...    26   5.6  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    26   7.4  
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz...    26   7.4  
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    25   9.7  
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb...    25   9.7  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   9.7  

>SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 333 ANSRSTPHTSTQGTGNLAQTMHGSLSTLLIWLLYFXQSFF 452
           A  R+T  ++ +   N A     SL  L+IW + + +SFF
Sbjct: 170 ARFRNTNESTNERVKNFAYLTFISLFVLVIWQILYLRSFF 209


>SPCC126.07c |||human CTD-binding SR-like protein rA9
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 571

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 101 PVEEKYKKLGEKSGAGEQERDEKSRSCACDWAGEQE 208
           PVEEK + +   + AGE   DE S +C C   G  +
Sbjct: 100 PVEEKTQSV---ANAGEPFEDEGSETCRCVICGRSD 132


>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +2

Query: 383 GANDAWISFYFT 418
           GA DAW+SFY T
Sbjct: 354 GAQDAWLSFYLT 365


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
 Frame = -2

Query: 138 LFSPNFLYFSSTGIEPHSLLCIFI---FCK*F 52
           + +PN   F S+ I  H  +C FI   FC+ F
Sbjct: 579 ILNPNSSIFPSSNISEHRAMCAFILSVFCRGF 610


>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 152 QERDEKSRSCACDWAGEQERDLRSL 226
           Q+   KSR    +WAGEQ ++L +L
Sbjct: 41  QDTVSKSRKRLDEWAGEQVKELETL 65


>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 133 EEWSRRTGERREIAQLCVRLGGG 201
           EE  R T E  +I +L VRL GG
Sbjct: 595 EEEERETKEAEKIRELSVRLNGG 617


>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 104 VEEKYKKLGEKSGAGEQERDEKSRS 178
           V E+Y+KL E    GE+ RD    S
Sbjct: 173 VIERYEKLDELQNKGEENRDASENS 197


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +2

Query: 278  LLQYSHWDLSLICLRLSHSKQQINSAHEYARHWKLGANDAWISFYFTNMAALL 436
            +LQ  H++ SL+   LS     IN  HEY++   LG   +W S    ++   L
Sbjct: 1491 MLQSGHYE-SLV---LSLDSFIINDNHEYSKMLNLGIEASWRSLSIDSLKKCL 1539


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,603,226
Number of Sequences: 5004
Number of extensions: 47975
Number of successful extensions: 126
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)