Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_E21
(817 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U91272-1|AAC51488.1| 25|Homo sapiens T-cell receptor delta cha... 33 1.6
L13740-1|AAA36763.1| 598|Homo sapiens TR3 orphan receptor protein. 31 6.6
D85245-1|BAA12746.1| 325|Homo sapiens TR3beta protein. 31 6.6
D49728-1|BAA08565.1| 598|Homo sapiens DNA binding protein protein. 31 6.6
CR456704-1|CAG32985.1| 598|Homo sapiens NR4A1 protein. 31 6.6
BT007144-1|AAP35808.1| 598|Homo sapiens nuclear receptor subfam... 31 6.6
BC016147-1|AAH16147.1| 598|Homo sapiens nuclear receptor subfam... 31 6.6
AK131566-1|BAD18699.1| 652|Homo sapiens protein ( Homo sapiens ... 31 6.6
AL160175-7|CAD38006.1| 783|Homo sapiens TPX2, microtubule-assoc... 30 8.7
AF287265-1|AAK83033.1| 783|Homo sapiens hepatocellular carcinom... 30 8.7
>U91272-1|AAC51488.1| 25|Homo sapiens T-cell receptor delta chain
protein.
Length = 25
Score = 32.7 bits (71), Expect = 1.6
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +2
Query: 155 ERDEKSRSCACDWAGEQERDLRSL 226
ERDE S CACD AG +RD R +
Sbjct: 1 ERDEGSYYCACDTAGGYDRDTRQM 24
>L13740-1|AAA36763.1| 598|Homo sapiens TR3 orphan receptor protein.
Length = 598
Score = 30.7 bits (66), Expect = 6.6
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = -2
Query: 228 TSERKSRSCSPAQSHAQLRDFSSLSCSPAPLFSPNFLYFSSTGIEPHSLLC 76
+S S + SPA + + DF C P PL P SS+G + + C
Sbjct: 86 SSTSSSSATSPASASFKFEDFQVYGCYPGPLSGPVDEALSSSGSDYYGSPC 136
>D85245-1|BAA12746.1| 325|Homo sapiens TR3beta protein.
Length = 325
Score = 30.7 bits (66), Expect = 6.6
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = -2
Query: 228 TSERKSRSCSPAQSHAQLRDFSSLSCSPAPLFSPNFLYFSSTGIEPHSLLC 76
+S S + SPA + + DF C P PL P SS+G + + C
Sbjct: 86 SSTSSSSATSPASASFKFEDFQVYGCYPGPLSGPVDEALSSSGSDYYGSPC 136
>D49728-1|BAA08565.1| 598|Homo sapiens DNA binding protein protein.
Length = 598
Score = 30.7 bits (66), Expect = 6.6
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = -2
Query: 228 TSERKSRSCSPAQSHAQLRDFSSLSCSPAPLFSPNFLYFSSTGIEPHSLLC 76
+S S + SPA + + DF C P PL P SS+G + + C
Sbjct: 86 SSTSSSSATSPASASFKFEDFQVYGCYPGPLSGPVDEALSSSGSDYYGSPC 136
>CR456704-1|CAG32985.1| 598|Homo sapiens NR4A1 protein.
Length = 598
Score = 30.7 bits (66), Expect = 6.6
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = -2
Query: 228 TSERKSRSCSPAQSHAQLRDFSSLSCSPAPLFSPNFLYFSSTGIEPHSLLC 76
+S S + SPA + + DF C P PL P SS+G + + C
Sbjct: 86 SSTSSSSATSPASASFKFEDFQVYGCYPGPLSGPVDEALSSSGSDYYGSPC 136
>BT007144-1|AAP35808.1| 598|Homo sapiens nuclear receptor subfamily
4, group A, member 1 protein.
Length = 598
Score = 30.7 bits (66), Expect = 6.6
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = -2
Query: 228 TSERKSRSCSPAQSHAQLRDFSSLSCSPAPLFSPNFLYFSSTGIEPHSLLC 76
+S S + SPA + + DF C P PL P SS+G + + C
Sbjct: 86 SSTSSSSATSPASASFKFEDFQVYGCYPGPLSGPVDEALSSSGSDYYGSPC 136
>BC016147-1|AAH16147.1| 598|Homo sapiens nuclear receptor subfamily
4, group A, member 1 protein.
Length = 598
Score = 30.7 bits (66), Expect = 6.6
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = -2
Query: 228 TSERKSRSCSPAQSHAQLRDFSSLSCSPAPLFSPNFLYFSSTGIEPHSLLC 76
+S S + SPA + + DF C P PL P SS+G + + C
Sbjct: 86 SSTSSSSATSPASASFKFEDFQVYGCYPGPLSGPVDEALSSSGSDYYGSPC 136
>AK131566-1|BAD18699.1| 652|Homo sapiens protein ( Homo sapiens
cDNA FLJ16818 fis, clone TRACH1000193, highly similar
to Orphan nuclear receptor HMR. ).
Length = 652
Score = 30.7 bits (66), Expect = 6.6
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = -2
Query: 228 TSERKSRSCSPAQSHAQLRDFSSLSCSPAPLFSPNFLYFSSTGIEPHSLLC 76
+S S + SPA + + DF C P PL P SS+G + + C
Sbjct: 140 SSTSSSSATSPASASFKFEDFQVYGCYPGPLSGPVDEALSSSGSDYYGSPC 190
>AL160175-7|CAD38006.1| 783|Homo sapiens TPX2,
microtubule-associated, homolog (Xenopus laevis)
protein.
Length = 783
Score = 30.3 bits (65), Expect = 8.7
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = -2
Query: 270 VREPRSRDPR*WHYTSER---KSRSCSPAQSHAQLRDFSSLSCSPAP 139
V + R P +H S++ K+ SCS Q+ Q RD SL C P P
Sbjct: 331 VEDFHKRTPNRYHLRSKKDDIKTGSCSVTQAGVQWRDHGSLQC-PTP 376
>AF287265-1|AAK83033.1| 783|Homo sapiens hepatocellular
carcinoma-associated antigen 90 protein.
Length = 783
Score = 30.3 bits (65), Expect = 8.7
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = -2
Query: 270 VREPRSRDPR*WHYTSER---KSRSCSPAQSHAQLRDFSSLSCSPAP 139
V + R P +H S++ K+ SCS Q+ Q RD SL C P P
Sbjct: 331 VEDFHKRTPNRYHLRSKKDDIKTGSCSVTQAGVQWRDHGSLQC-PTP 376
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,698,961
Number of Sequences: 237096
Number of extensions: 1942148
Number of successful extensions: 4987
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4981
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10147868276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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