Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_E17
(837 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 283 3e-77
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 278 6e-76
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 116 4e-27
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 61 2e-10
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.27
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.35
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 1.4
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 28 1.4
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 28 1.4
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.8
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 26 7.6
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 7.6
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 283 bits (693), Expect = 3e-77
Identities = 124/153 (81%), Positives = 139/153 (90%)
Frame = -2
Query: 590 SVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDW 411
SV EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ +IK++RTIQFVDW
Sbjct: 291 SVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDW 350
Query: 410 CPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVH 231
CPTGFK+GI Y+PP VPG +AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVH
Sbjct: 351 CPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVH 410
Query: 230 WYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 132
WYVGEGMEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 411 WYVGEGMEEGEFSEAREDLAALERDYEEVGQDS 443
Score = 52.4 bits (120), Expect = 8e-08
Identities = 31/81 (38%), Positives = 37/81 (45%)
Frame = -3
Query: 835 NEPIYXXXPRXXDIGXPXYTXLNCXIGQXXXXITXFXEIRRRXEXGPHXSSRLXWCLXPR 656
NE Y R DI P Y LN I Q IT + + PR
Sbjct: 210 NEACYDICRRNLDIERPTYENLNRLIAQVVSSITASLRFAGSLNVDLN-EFQTNLVPYPR 268
Query: 655 IHFPLVTYAPVISAEKAYHNS 593
IHFPLVTY+P++SA KA+H S
Sbjct: 269 IHFPLVTYSPIVSAAKAFHES 289
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 278 bits (682), Expect = 6e-76
Identities = 123/153 (80%), Positives = 137/153 (89%)
Frame = -2
Query: 590 SVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDW 411
SV EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ TIK KRTIQFVDW
Sbjct: 287 SVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDW 346
Query: 410 CPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVH 231
CPTGFK+GI +PP + G ++AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVH
Sbjct: 347 CPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVH 406
Query: 230 WYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 132
WYVGEGMEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 407 WYVGEGMEEGEFSEAREDLAALERDYEEVGQDS 439
Score = 54.4 bits (125), Expect = 2e-08
Identities = 38/114 (33%), Positives = 47/114 (41%), Gaps = 1/114 (0%)
Frame = -3
Query: 835 NEPIYXXXPRXXDIGXPXYTXLNCXIGQXXXXITXFXEIRRRXEXGPHXSS-RLXWCLXP 659
NE Y R DI P Y LN I Q IT +R + + P
Sbjct: 206 NESCYDICRRNLDIERPSYENLNRLIAQVVSSITA--SLRFEGSLNVDLAEFQTNLVPYP 263
Query: 658 RIHFPLVTYAPVISAEKAYHNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVC 497
RIHFPLVTYAP++SA KA+H S P + P A ++A C
Sbjct: 264 RIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDP-RAGRYMATC 316
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 116 bits (279), Expect = 4e-27
Identities = 59/156 (37%), Positives = 90/156 (57%), Gaps = 3/156 (1%)
Frame = -2
Query: 593 LSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 414
+SV E+T F+ N MV DPRHG+Y+ L+RG V K+V+ I +++TK + FV+
Sbjct: 284 VSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVE 343
Query: 413 WCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFV 234
W P + PP DL + + + N+T+I E + RL +F M+ ++AF+
Sbjct: 344 WIPDNVLKAVCSVPPK-----DL---KMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFL 395
Query: 233 HWYVGEGMEEGEFSEAR---EDLAALEKDYEEVGMD 135
HWY GEGM+E EF+EA DL + + Y+E G+D
Sbjct: 396 HWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAGID 431
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 61.3 bits (142), Expect = 2e-10
Identities = 38/151 (25%), Positives = 76/151 (50%), Gaps = 4/151 (2%)
Frame = -2
Query: 590 SVAEITNACFEPANQMVKCDP-RHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 414
+V ++ P NQMV +P + +++ + +G+ P DV+ ++ I+ +R F+
Sbjct: 291 TVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIP 350
Query: 413 WCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFV 234
W P +V ++ + P + ++ + ML+N T+IA + R ++D + + AF+
Sbjct: 351 WGPASIQVALSKKSPYIKTNHRVSGL-----MLANHTSIASLFKRTLDQYDRLRKRNAFL 405
Query: 233 HWYVGEGMEE---GEFSEAREDLAALEKDYE 150
Y E + E EF +R+ +A L +YE
Sbjct: 406 EQYKKEAIFEDDLNEFDSSRDVVADLINEYE 436
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 30.7 bits (66), Expect = 0.27
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -3
Query: 490 VVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 356
VV P + RP++P P LS V PV+ V + PP P
Sbjct: 552 VVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 30.3 bits (65), Expect = 0.35
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Frame = -3
Query: 637 TYAPVISAEKAYHNSFP---SPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM 467
T PV S+ +S P +P + T+ ++ + +TPV ++ CT TS P
Sbjct: 505 TSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYT 564
Query: 466 *TRPSLPSKPSVLSNSSTGVQPVSRSVSTTS 374
T P S ++ S++ PV+ + TTS
Sbjct: 565 ST-PVTSSNYTISSSTPVTSTPVTTTNCTTS 594
Score = 26.6 bits (56), Expect = 4.4
Identities = 20/76 (26%), Positives = 32/76 (42%)
Frame = -3
Query: 595 SFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSS 416
S +P + T+ ++ + +TPV ++ CT TS P T + S P +N +
Sbjct: 417 SSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPY--TSTPVTSTPLTTTNCT 474
Query: 415 TGVQPVSRSVSTTSHP 368
T S TS P
Sbjct: 475 TSTSIPYTSTPVTSTP 490
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -2
Query: 578 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 453
+ ACFEP N C H K C L + KD N ++
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +3
Query: 450 SDGRVHILGYDVTTVQHTASHVLAMTGVAFHHLVGGLEACVCDLGDGK 593
S G +LGY ++ A++V+A + V HL+ G D + K
Sbjct: 407 SAGLTSLLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSESK 454
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 28.3 bits (60), Expect = 1.4
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -3
Query: 286 GLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS--RRITKKSAWTPLKARVR 113
G+ TS TS T S S++ S+P P W P+ S+ TP+ V
Sbjct: 148 GVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTPVYVVVD 207
Query: 112 EPKSTK 95
EP+ TK
Sbjct: 208 EPRFTK 213
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 5.8
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -3
Query: 454 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 368
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.8 bits (54), Expect = 7.6
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 473 WVRRHHGTAYSKPCTCHDGG 532
W R H Y+KPC DGG
Sbjct: 16 WRRDHPFGFYAKPCKSSDGG 35
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 7.6
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = -3
Query: 631 APVISAEKAYHNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPR 470
APV SA YHNS S RS +H+SS ++ P++ ++ ++ + +Y R
Sbjct: 417 APVSSA--FYHNS-TSSRSSSHSSSHSLSSLSSKPILTASSSSLLTSSSHTYER 467
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,946,534
Number of Sequences: 5004
Number of extensions: 59438
Number of successful extensions: 227
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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