Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_E16
         (833 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    62   7e-11
SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|...    29   0.61 
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    29   1.1  
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    29   1.1  
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||...    26   5.7  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 62.5 bits (145), Expect = 7e-11
 Identities = 32/67 (47%), Positives = 35/67 (52%)
 Frame = -1

Query: 809 PXGFKXXXPXIGXSPXXQELFKXXXGXVXRYVQAXXXLXWYPGGGMDEMEFTXAESNMXD 630
           P   K     IG S   QE+F+          +    L WY G GMDEMEFT AESNM D
Sbjct: 358 PKDLKMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMND 417

Query: 629 LVSEYXQ 609
           LVSEY Q
Sbjct: 418 LVSEYQQ 424


>SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 572

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +2

Query: 170 ILDIKIKFSLIKKKDLFPLCDSVTAPRACSAEGLASL 280
           ++D  IK +L+KKK ++    +  A + C+A G ASL
Sbjct: 158 LIDYAIKMALLKKKPVYIEVPTNVASQPCAAPGPASL 194


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 692 WYPGGGMDEMEFTXAESNMXDLVSEYXQ 609
           WY G GM+E EF+ A  ++  L  +Y +
Sbjct: 411 WYVGEGMEEGEFSEAREDLAALERDYEE 438


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 692 WYPGGGMDEMEFTXAESNMXDLVSEYXQ 609
           WY G GM+E EF+ A  ++  L  +Y +
Sbjct: 407 WYVGEGMEEGEFSEAREDLAALERDYEE 434


>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 430 SYYINTKSKSIVDLSKGERWKGG 498
           SY++     SI+  S G++WK G
Sbjct: 56  SYFVTRNKSSIIAFSIGKKWKPG 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,624,827
Number of Sequences: 5004
Number of extensions: 46506
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)