Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_E15
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...    83   7e-17
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    27   3.5  
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni...    26   6.2  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   8.2  

>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 82.6 bits (195), Expect = 7e-17
 Identities = 39/74 (52%), Positives = 55/74 (74%)
 Frame = -1

Query: 740 DVLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNRTRQAVI 561
           +V Q   EF+ A+ +F A+ E  CSE SSR  AM+NASK+AG+MI+K ++ +NR RQA I
Sbjct: 227 EVHQPLMEFAFANAIFSAMAEAHCSEMSSRRNAMENASKSAGDMINKFSIQYNRQRQASI 286

Query: 560 TRELIEIISGAAAL 519
           T ELI+I++GA +L
Sbjct: 287 TNELIDIVTGANSL 300


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +2

Query: 29  TLFLTTTAPTHRSQRAARHMLKPVSFRVSVAGMGAVQCRHRKSY 160
           T F  T AP H S  A +H   PV+       +  +Q  H   +
Sbjct: 399 TPFSPTLAPQHTSSNATKHSAPPVTKSAPFPVVSPLQLNHTPGF 442


>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
           Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 746 DSDVLQSYTEFSLASLLFYALKEGACSEQ 660
           D D+ Q Y   ++ASLL ++L +  CS Q
Sbjct: 146 DQDMRQLYMATTIASLLDFSLSDPLCSIQ 174


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +1

Query: 52   AHTQVTARSPTYVEASLVSRECCRDGSCPV 141
            +H ++ A  P+YV    +S E C++   P+
Sbjct: 3363 SHMRIIADKPSYVTMQTISDEYCKNRGMPL 3392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,719,436
Number of Sequences: 5004
Number of extensions: 46659
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)