Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_E14
         (833 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc...    50   4e-07
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha...    28   1.4  
SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy...    28   1.4  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    26   5.7  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    26   7.6  

>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 40/147 (27%), Positives = 59/147 (40%), Gaps = 9/147 (6%)
 Frame = -2

Query: 601 GPLRHYSDPENAEFLSCIRRGEIPSELSGQGVSVRVSLEDSRHEECPRHVVKPQAFAGKG 422
           GP+  Y DP N E L  I  G  P  L G  ++  + +   +H     +V   + F+GKG
Sbjct: 228 GPIYTYDDPANQEMLRYINSGRAPLHLLGVSMNQPIDVV-VQHRMDEDYVAPFKPFSGKG 286

Query: 421 HMLGSP-TPP--------XXXXXXXXXXXXXXXXANLRAAQSAVTLDETQPVTTLQFRLA 269
             LGS    P                         N     +++ +DE +P T +Q RL+
Sbjct: 287 QRLGSTYMQPRMSQMPGGLYTDTSTSSSVPINVKPNSTTPHASLQIDENKPTTRIQVRLS 346

Query: 268 DGTRITGRFNHSHTVGALREFVSRAEP 188
           +G R     N SHT+  + E V    P
Sbjct: 347 NGGRTVLTVNLSHTLHDIYEAVRAVSP 373


>SPCC1020.08 |||wybutosine biosynthesis protein
           Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 688

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = -2

Query: 583 SDPENAEFLSCIRRGEIPSELSGQGVSVRVSLEDSRHEECPRHVVKPQAFAGKGHMLGSP 404
           S PENA +L  +   EI S +     S++ S  D R  + P H +   A  G G M   P
Sbjct: 138 SCPENAIYLVVLPSYEIESSIDYYLSSLQESFSDFRVPKDPLHGLSGYAVFGLGDMENYP 197


>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 295 VTTLQFRLADGTRITGRFNHSHTVGALREFVSRAEPAYQLRPFSL 161
           VT +Q R+ +G R   RF+ +  V  +  +V         +PFSL
Sbjct: 353 VTRIQIRMPNGARFIRRFSLTDPVSKVYAYVKGVAEGADKQPFSL 397


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 94  EQVRLRQGSRRRHPAPRSGRP 156
           + +RL    R R P+PRSGRP
Sbjct: 337 QSLRLGSLHRSRSPSPRSGRP 357


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -2

Query: 604 RGPLRHYSDPENAEF 560
           R  LRHYS+PE AEF
Sbjct: 635 RRRLRHYSNPEIAEF 649


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,187,809
Number of Sequences: 5004
Number of extensions: 32601
Number of successful extensions: 93
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)