Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_E14
(833 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0850 - 25354002-25354391,25354480-25354575,25355352-253556... 89 4e-18
04_04_0156 + 23160681-23160862,23161090-23161179,23163145-231634... 84 2e-16
07_03_1104 + 24001594-24002139 31 0.86
03_06_0557 + 34704990-34705400,34706271-34706485,34707142-347073... 31 0.86
06_03_1303 + 29180837-29181205,29181289-29181306,29181337-291816... 31 1.1
11_06_0377 - 22900042-22900452,22900527-22902236 31 1.5
02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749... 29 4.6
06_03_0941 + 26179682-26182327 29 6.0
>06_03_0850 -
25354002-25354391,25354480-25354575,25355352-25355634,
25357213-25357799
Length = 451
Score = 89.0 bits (211), Expect = 4e-18
Identities = 49/153 (32%), Positives = 71/153 (46%), Gaps = 1/153 (0%)
Frame = -2
Query: 601 GPLRHYSDPENAEFLSCIRRGEIPSELSGQGVSVRVSLEDSRHEE-CPRHVVKPQAFAGK 425
GPLR + DP NA FL I+ E PSEL +V++ R EE CP V + F G
Sbjct: 275 GPLRSFDDPANASFLKSIKNSECPSELEPADKKSQVNVNLVRKEEKCPEPVKRAAPFHGA 334
Query: 424 GHMLGSPTPPXXXXXXXXXXXXXXXXANLRAAQSAVTLDETQPVTTLQFRLADGTRITGR 245
LG+P+ + +T+D++ P T+LQ R DG+R+
Sbjct: 335 AKTLGTPSDNNSTPPEATSAAAAASSTETASKTVTITVDDSLPSTSLQIRFVDGSRMVAH 394
Query: 244 FNHSHTVGALREFVSRAEPAYQLRPFSLLTAFP 146
FN SHT+ +R F+ P + ++L FP
Sbjct: 395 FNTSHTIADVRAFIDTTRPG-EAGDYTLQAGFP 426
>04_04_0156 +
23160681-23160862,23161090-23161179,23163145-23163433,
23164574-23164669,23164755-23165123
Length = 341
Score = 83.8 bits (198), Expect = 2e-16
Identities = 51/154 (33%), Positives = 74/154 (48%), Gaps = 2/154 (1%)
Frame = -2
Query: 601 GPLRHYSDPENAEFLSCIRRGEIPSEL--SGQGVSVRVSLEDSRHEECPRHVVKPQAFAG 428
GPLR Y DP NA+F+ I++ + P EL + + V V++ R E+ + P F G
Sbjct: 172 GPLRDYDDPANADFIESIKKSQCPQELEPADRRTPVHVNVI-KRLEDYQAPLRPPSPFQG 230
Query: 427 KGHMLGSPTPPXXXXXXXXXXXXXXXXANLRAAQSAVTLDETQPVTTLQFRLADGTRITG 248
G LG + + +D++ P T++Q RLADGTR+
Sbjct: 231 VGRTLGGGSSAEESQAPAPATQEPRRSVG-------IVVDDSLPFTSIQLRLADGTRMVA 283
Query: 247 RFNHSHTVGALREFVSRAEPAYQLRPFSLLTAFP 146
RFN HTVG +R F+ + P RP+ L T FP
Sbjct: 284 RFNMHHTVGDIRSFIDASRPG-ATRPYQLQTGFP 316
>07_03_1104 + 24001594-24002139
Length = 181
Score = 31.5 bits (68), Expect = 0.86
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +1
Query: 535 SHRDVCSSGTPRSPGRCSGAADPASTVKPSRYRH 636
+HRDV + P S GR + AD AS R RH
Sbjct: 61 AHRDVVVAAAPASSGRVAADADAASEADGRRRRH 94
>03_06_0557 +
34704990-34705400,34706271-34706485,34707142-34707367,
34707447-34707532,34708030-34708121,34708232-34708471,
34709455-34709750
Length = 521
Score = 31.5 bits (68), Expect = 0.86
Identities = 23/52 (44%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +1
Query: 73 PLHDRRVEQVRLR---QGSRRRHPAPRSGRPSAD*MAAAGTPAPLATRTPSA 219
P H RR +Q RLR S P+PRSGR A AAA PA +A A
Sbjct: 23 PPHSRRQQQQRLRSPTSPSLSPSPSPRSGRHKA---AAAAPPAVVAAAAVGA 71
>06_03_1303 +
29180837-29181205,29181289-29181306,29181337-29181622,
29185008-29186284,29186499-29187005
Length = 818
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 79 HDRRVEQVRLRQGSRRRHPAPR-SGRPSAD*MAAAGTPAPLATRT 210
+D+R+E+ R R+ R R P+P S PS A+A TP T T
Sbjct: 511 YDKRMERERERERKRVRAPSPSPSPSPSPSPSASATTPTQTGTST 555
>11_06_0377 - 22900042-22900452,22900527-22902236
Length = 706
Score = 30.7 bits (66), Expect = 1.5
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -1
Query: 623 EGFTVDA-GSAAPLQRPGERGVPELHTSR*DSXXXXXXXXXXXGEPRGQQTRGVSPARGQ 447
+G VDA G A R GE P+ D+ G G++ RGV P R +
Sbjct: 116 QGHEVDAAGDADDEARRGEVRAPQGRAYDDDAAEDEEGLRFLPGRALGEEVRGVLPLRDR 175
Query: 446 AAGLRRER 423
A LRR+R
Sbjct: 176 ALRLRRDR 183
>02_05_1052 +
33770355-33773981,33774217-33774336,33774880-33774996,
33775322-33775411,33775971-33776078,33776304-33776351
Length = 1369
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 124 RRHPAPRSGRPSAD*MAAAGTPA 192
RRHP+P +GR SA AAG+ A
Sbjct: 51 RRHPSPNAGRSSAAAAEAAGSQA 73
>06_03_0941 + 26179682-26182327
Length = 881
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 607 TRGPLRHYSDPENAEFLSCIRRGEIPSELSGQGVSVRVSLE 485
T GP HY +P N + + I + E P +GV V S+E
Sbjct: 370 TAGPSLHYPNPPNPDKVLYINKKEAPLLKVERGVPVTFSVE 410
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,367,386
Number of Sequences: 37544
Number of extensions: 291833
Number of successful extensions: 1135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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