Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_E13
         (768 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical ...   245   3e-65
AL023815-3|CAD92384.1|  503|Caenorhabditis elegans Hypothetical ...   245   3e-65
AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical ...   245   3e-65
U28928-1|AAA68334.3|  589|Caenorhabditis elegans Anchor cell fus...    29   3.6  
EF205023-1|ABP04049.1|  589|Caenorhabditis elegans anchor cell f...    29   3.6  
AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trn...    29   4.8  
AF077541-8|AAK68426.1|  908|Caenorhabditis elegans Cysteinyl trn...    29   4.8  

>AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical
           protein H28O16.1d protein.
          Length = 511

 Score =  245 bits (599), Expect = 3e-65
 Identities = 117/148 (79%), Positives = 134/148 (90%)
 Frame = -2

Query: 719 IRPAINVGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDAATQQLLNR 540
           +RPAINVGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDA+TQQLLNR
Sbjct: 362 VRPAINVGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDASTQQLLNR 421

Query: 539 GMRLTELLKQGQYVPMAIEEQVAIIYCGVRGHLDKLDPSKITAFEKEFTQHIKTSHQGLL 360
           G+RLTELLKQGQYVPM IEEQV +IY GV+G+LDK+DPS IT FEKEF  H+++S Q LL
Sbjct: 422 GVRLTELLKQGQYVPMGIEEQVGVIYAGVKGYLDKVDPSAITKFEKEFLAHLRSSQQALL 481

Query: 359 STIAKDGQITPESDASLKKIVTDFLATF 276
            TI ++GQI+P++DA LK +V +FLATF
Sbjct: 482 KTIREEGQISPQTDAQLKDVVVNFLATF 509


>AL023815-3|CAD92384.1|  503|Caenorhabditis elegans Hypothetical
           protein H28O16.1c protein.
          Length = 503

 Score =  245 bits (599), Expect = 3e-65
 Identities = 117/148 (79%), Positives = 134/148 (90%)
 Frame = -2

Query: 719 IRPAINVGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDAATQQLLNR 540
           +RPAINVGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDA+TQQLLNR
Sbjct: 354 VRPAINVGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDASTQQLLNR 413

Query: 539 GMRLTELLKQGQYVPMAIEEQVAIIYCGVRGHLDKLDPSKITAFEKEFTQHIKTSHQGLL 360
           G+RLTELLKQGQYVPM IEEQV +IY GV+G+LDK+DPS IT FEKEF  H+++S Q LL
Sbjct: 414 GVRLTELLKQGQYVPMGIEEQVGVIYAGVKGYLDKVDPSAITKFEKEFLAHLRSSQQALL 473

Query: 359 STIAKDGQITPESDASLKKIVTDFLATF 276
            TI ++GQI+P++DA LK +V +FLATF
Sbjct: 474 KTIREEGQISPQTDAQLKDVVVNFLATF 501


>AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical
           protein H28O16.1a protein.
          Length = 538

 Score =  245 bits (599), Expect = 3e-65
 Identities = 117/148 (79%), Positives = 134/148 (90%)
 Frame = -2

Query: 719 IRPAINVGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDAATQQLLNR 540
           +RPAINVGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDA+TQQLLNR
Sbjct: 389 VRPAINVGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDASTQQLLNR 448

Query: 539 GMRLTELLKQGQYVPMAIEEQVAIIYCGVRGHLDKLDPSKITAFEKEFTQHIKTSHQGLL 360
           G+RLTELLKQGQYVPM IEEQV +IY GV+G+LDK+DPS IT FEKEF  H+++S Q LL
Sbjct: 449 GVRLTELLKQGQYVPMGIEEQVGVIYAGVKGYLDKVDPSAITKFEKEFLAHLRSSQQALL 508

Query: 359 STIAKDGQITPESDASLKKIVTDFLATF 276
            TI ++GQI+P++DA LK +V +FLATF
Sbjct: 509 KTIREEGQISPQTDAQLKDVVVNFLATF 536


>U28928-1|AAA68334.3|  589|Caenorhabditis elegans Anchor cell fusion
           failure protein1 protein.
          Length = 589

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 589 PSSVLTWMPLHSSCSTEECVLLSSSSKDNMCPWLL 485
           P    +W   HS CS  EC  L S   D + PW++
Sbjct: 489 PRQEQSWSKGHSPCSQAECNSLKSGVSD-LFPWIM 522


>EF205023-1|ABP04049.1|  589|Caenorhabditis elegans anchor cell
           fusion failure-1 protein.
          Length = 589

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 589 PSSVLTWMPLHSSCSTEECVLLSSSSKDNMCPWLL 485
           P    +W   HS CS  EC  L S   D + PW++
Sbjct: 489 PRQEQSWSKGHSPCSQAECNSLKSGVSD-LFPWIM 522


>AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trna
           synthetase protein1, isoform a protein.
          Length = 909

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 495 GHILSLLEELSKTHSSVEQLLCSGIQVRTELGKSCDLTVL 614
           G  L L+EE  K  S V + LC  +  R+ + K  +L  L
Sbjct: 649 GKELKLMEEFGKLKSEVHEALCDSVDTRSVIEKFRELISL 688


>AF077541-8|AAK68426.1|  908|Caenorhabditis elegans Cysteinyl trna
           synthetase protein1, isoform b protein.
          Length = 908

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 495 GHILSLLEELSKTHSSVEQLLCSGIQVRTELGKSCDLTVL 614
           G  L L+EE  K  S V + LC  +  R+ + K  +L  L
Sbjct: 648 GKELKLMEEFGKLKSEVHEALCDSVDTRSVIEKFRELISL 687


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,753,291
Number of Sequences: 27780
Number of extensions: 310569
Number of successful extensions: 998
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)