Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_E11
         (814 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.0  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -2

Query: 594 GGGXXXPPPGGXPXGGXPPPXP 529
           GG    PPP G    G PPP P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPP 780



 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -2

Query: 597 GGGGXXXPPPGGXPXGGXPPPXP 529
           GG     PPPG    G  PPP P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = -2

Query: 576 PPPGGXPXGGXPPPXPXXGGXXXFXGXXXPPXXP 475
           PPP   P  G PPP P   G         PP  P
Sbjct: 752 PPPA--PIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -1

Query: 601 PXGGGXKXXSPXGXPPGGXPXPPPPXG 521
           P G       P G  P   P PPPP G
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPG 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,419,684
Number of Sequences: 5004
Number of extensions: 14540
Number of successful extensions: 66
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)