Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_E10
         (831 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    54   2e-08
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    44   2e-05
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    35   0.016
SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyce...    29   1.1  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    27   4.3  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    26   7.5  
SPAC23C4.15 |rpb5||DNA-directed RNA polymerase I, II and III sub...    25   10.0 

>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 27/60 (45%), Positives = 39/60 (65%)
 Frame = -2

Query: 602  AYEPEGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 423
            A+   G+E ++SP  +MSFE++  FL +A L    DDL + SS L+VGR+   GTG FD+
Sbjct: 1620 AFNRMGIEYNTSPFAKMSFETTCHFLTEAALRGDVDDLSNPSSRLVVGRVGNFGTGSFDI 1679



 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 17/27 (62%), Positives = 22/27 (81%)
 Frame = -3

Query: 670  GITVDPRHLTLIADYMTYNGIFEPMSR 590
            GI VDPRHL+LIADYMT+ G ++  +R
Sbjct: 1597 GIAVDPRHLSLIADYMTFEGGYKAFNR 1623


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 20/52 (38%), Positives = 31/52 (59%)
 Frame = -2

Query: 578  ASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 423
            A +  L + SFE ++  L DA  + +KDD +  S  +M+G+L   GTG FD+
Sbjct: 1398 AETGALMRCSFEETVEILMDAAASGEKDDCKGISENIMLGQLAPMGTGAFDI 1449


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 34.7 bits (76), Expect = 0.016
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = -2

Query: 569  SPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 423
            S L   SFE +   L +A     KD +   S C+++G+L   GT VF L
Sbjct: 1328 SVLALASFEKTTDHLFNAAARFAKDSIEGISECIVLGKLAPIGTNVFQL 1376



 Score = 31.9 bits (69), Expect = 0.11
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -3

Query: 670  GITVDPRHLTLIADYMTYNG 611
            G+TVDPRH+ L+ D MT  G
Sbjct: 1293 GLTVDPRHIMLLGDVMTCKG 1312


>SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 205

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
 Frame = +3

Query: 249 LSKLTPSTDDDDIN-LSLMGKAKDFSPYSQAPSTDRKAR*MTRRSRLRQ--INFAIQVRV 419
           L++    TD+ D   LSL  K+K     S A   D K R   RR RLR+  +     V  
Sbjct: 75  LNQQVTQTDEQDTPVLSLSKKSKKALRKSNAEKKDSKLRTSRRRERLRKEMVGRVTSVVA 134

Query: 420 LQIEHAGAGATQPAD-HQTARSGPEIVFLRIQYGVLQ 527
           +  E A A  T   +  + AR G   +F  ++   LQ
Sbjct: 135 VNAETAKALFTHERELRRIARRGVVQLFNAVRTAQLQ 171


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 273 DDDDINLSLMGKAKDFSPYSQAPSTDRKAR*MTRRSRLRQIN 398
           DD+   L L+ KAKD         TD+    +TR  R++Q N
Sbjct: 777 DDEAAYLQLLDKAKDTRITHLLKQTDQYLENLTRAVRIQQSN 818


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
 Frame = -2

Query: 575 SSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQHSH----- 411
           S  P    +   SL +L D   +SKK+ + S SS      L +    V   +H H     
Sbjct: 403 SMKPSNASNHTVSLGYLNDRPNHSKKNSVTSTSSSQFNNFLEQNQKAVRSARHRHYASLD 462

Query: 410 ---LYGKVNLSKS*PPRHSPCFSI 348
              L+   NLSK+    HS  FS+
Sbjct: 463 EQGLHSLRNLSKTSGMNHSADFSL 486


>SPAC23C4.15 |rpb5||DNA-directed RNA polymerase I, II and III
           subunit Rpb5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +2

Query: 587 LPAHRLKDPVVRHVVGYEGQVARI--NSDTXKR*NTFGI 697
           LP  +L DPV R++    G+V +I   S+T  R N++ I
Sbjct: 170 LPRIQLADPVARYLGLKRGEVVKIVRRSETSGRYNSYRI 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,926,576
Number of Sequences: 5004
Number of extensions: 58363
Number of successful extensions: 152
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)