Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_E10
(831 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0742 + 24027506-24027721,24028835-24029004,24029893-240300... 46 5e-05
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 40 0.002
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 36 0.030
04_04_0348 + 24568834-24568904,24569019-24569148,24569310-245694... 32 0.49
01_03_0186 - 13577780-13578265 31 0.85
12_02_0858 + 23740589-23743233,23743362-23743503,23744778-237449... 28 7.9
>06_03_0742 + 24027506-24027721,24028835-24029004,24029893-24030052,
24030162-24030455,24031490-24031717,24031827-24032006,
24032079-24032238,24032591-24032617,24033426-24033613,
24034269-24034532,24035123-24035218,24035311-24035399,
24035473-24035620,24035842-24036051,24036141-24036440,
24037906-24038248,24038747-24038952,24039071-24039273,
24040021-24040117,24040148-24040222,24040328-24040602,
24041116-24041256,24041469-24042339,24042481-24042520,
24042605-24043050
Length = 1808
Score = 45.6 bits (103), Expect = 5e-05
Identities = 20/37 (54%), Positives = 26/37 (70%)
Frame = -3
Query: 700 GDTKRILTFXGITVDPRHLTLIADYMTYNGIFEPMSR 590
G+ K + GI VD RHL LIAD+MT++G + PMSR
Sbjct: 1703 GEVKGVFGAYGIHVDMRHLNLIADFMTFDGGYRPMSR 1739
Score = 37.5 bits (83), Expect = 0.013
Identities = 17/51 (33%), Positives = 31/51 (60%)
Frame = -2
Query: 575 SSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 423
S+SP +M+FE++ F+ +A + + D L S+ + +G+ + GTG F L
Sbjct: 1746 STSPFGKMTFETATKFIVEAASHGESDTLDGPSASVCLGKPVKVGTGSFGL 1796
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 40.3 bits (90), Expect = 0.002
Identities = 20/50 (40%), Positives = 30/50 (60%)
Frame = -2
Query: 572 SSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 423
+ PL + SFE ++ L DA + ++ D LR S +M+G+L GTG DL
Sbjct: 1452 TGPLMRCSFEETVDILLDAAVYAESDPLRGVSENIMLGQLAPIGTGGCDL 1501
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 685 ILTFXGITVDPRHLTLIADYMTYNGIFEPMSR 590
+++F G V+ RHL ++ D MTY G ++R
Sbjct: 1413 VISFDGSYVNYRHLAVLCDTMTYRGHLMAITR 1444
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 36.3 bits (80), Expect = 0.030
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = -2
Query: 572 SSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTG 435
+ PL + SFE ++ L DA + ++ D LR + +M+G+L GTG
Sbjct: 1414 TGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTG 1459
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 685 ILTFXGITVDPRHLTLIADYMTYNGIFEPMSR 590
+++F G V+ RHL ++ D MTY G ++R
Sbjct: 1375 VISFDGSYVNYRHLAILCDTMTYRGHLMAITR 1406
>04_04_0348 + 24568834-24568904,24569019-24569148,24569310-24569459,
24569546-24569650,24569808-24570029,24570162-24570274,
24570371-24570470,24571125-24571325,24571401-24571549,
24571624-24571765,24571851-24571991,24572098-24572286,
24572622-24572835,24573198-24573291,24573671-24573905,
24574242-24574433,24574919-24575017,24575443-24575532,
24575709-24575912,24575994-24576269,24576974-24577096,
24577453-24577608,24577686-24577802,24577878-24577957,
24578173-24578377,24578485-24578687,24578882-24578933
Length = 1350
Score = 32.3 bits (70), Expect = 0.49
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = -2
Query: 572 SSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQ 420
SS L SFE + L +A + ++D + S C+++G + GTG+ ++
Sbjct: 1282 SSVLMLASFEKTAEHLFNASYSGREDQIEGVSECIIMGIPMQLGTGILKVR 1332
Score = 31.1 bits (67), Expect = 1.1
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -3
Query: 670 GITVDPRHLTLIADYMTYNG 611
G+ +D RH+ L+AD MTY G
Sbjct: 1248 GMNIDSRHMMLLADLMTYKG 1267
>01_03_0186 - 13577780-13578265
Length = 161
Score = 31.5 bits (68), Expect = 0.85
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 512 IWRPSRTKATIRTTFAVTATKTPPFLPAHRLKDPVVR 622
I RP R +IRT+F F+P H + DP VR
Sbjct: 80 IRRPFRASHSIRTSFRFCTEIANSFIPCHSVADPSVR 116
>12_02_0858 +
23740589-23743233,23743362-23743503,23744778-23744990,
23745083-23745190,23745378-23745587,23745881-23746055,
23746197-23746264
Length = 1186
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = -3
Query: 301 IRDKLISSSSVEGVNFDS*QFSITEQNTHHSSS 203
+RDK+I+SSS EGVN S +++ N +S+
Sbjct: 212 LRDKIIASSSFEGVNTGSLTSTLSGMNLPTNSA 244
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,284,961
Number of Sequences: 37544
Number of extensions: 388156
Number of successful extensions: 974
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -