Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_E10
(831 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U33460-1|AAC99959.1| 1717|Homo sapiens DNA-directed RNA polymera... 68 4e-11
BC126303-1|AAI26304.1| 1720|Homo sapiens polymerase (RNA) I poly... 68 4e-11
BC117173-1|AAI17174.1| 1720|Homo sapiens polymerase (RNA) I poly... 68 4e-11
BC017115-1|AAH17115.2| 574|Homo sapiens POLR1A protein protein. 68 4e-11
AL117467-1|CAB55942.1| 95|Homo sapiens hypothetical protein pr... 68 4e-11
AK025568-1|BAB15171.1| 495|Homo sapiens protein ( Homo sapiens ... 68 4e-11
AC012511-1|AAY24277.1| 922|Homo sapiens unknown protein. 68 4e-11
X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest... 41 0.005
X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest... 38 0.059
BC041089-1|AAH41089.1| 1390|Homo sapiens polymerase (RNA) III (D... 35 0.31
AY091462-1|AAM12032.1| 299|Homo sapiens RNA polymerase III subu... 35 0.31
AL512628-1|CAI16466.1| 1390|Homo sapiens polymerase (RNA) III (D... 35 0.31
AF021351-1|AAB86536.1| 1391|Homo sapiens RNA polymerase III larg... 35 0.31
AB189741-1|BAD89507.1| 1036|Homo sapiens Rho interacting protein... 31 3.9
BC067781-1|AAH67781.1| 310|Homo sapiens EDG8 protein protein. 31 6.8
BC034703-1|AAH34703.1| 398|Homo sapiens endothelial differentia... 31 6.8
AY262689-1|AAP20653.1| 398|Homo sapiens G-protein coupled recep... 31 6.8
AK074661-1|BAC11119.1| 398|Homo sapiens 8. protein. 31 6.8
AF331840-1|AAL57041.1| 398|Homo sapiens SPPR protein. 31 6.8
AF317676-1|AAG38113.1| 398|Homo sapiens sphingosine 1-phosphate... 31 6.8
AB083602-1|BAB89315.1| 398|Homo sapiens putative G-protein coup... 31 6.8
>U33460-1|AAC99959.1| 1717|Homo sapiens DNA-directed RNA polymerase I,
largest subunit protein.
Length = 1717
Score = 68.1 bits (159), Expect = 4e-11
Identities = 30/56 (53%), Positives = 44/56 (78%)
Frame = -2
Query: 587 GMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQ 420
G+ ++SSPLQQM+FE+S FLK A + D+LRS S+CL+VG++ R GTG+F+L+
Sbjct: 1658 GIRSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVRGGTGLFELK 1713
Score = 48.0 bits (109), Expect = 4e-05
Identities = 17/36 (47%), Positives = 27/36 (75%)
Frame = -3
Query: 697 DTKRILTFXGITVDPRHLTLIADYMTYNGIFEPMSR 590
+ K + GI VDPRHL+L+ADYM + G+++P++R
Sbjct: 1621 EIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNR 1656
>BC126303-1|AAI26304.1| 1720|Homo sapiens polymerase (RNA) I
polypeptide A, 194kDa protein.
Length = 1720
Score = 68.1 bits (159), Expect = 4e-11
Identities = 30/56 (53%), Positives = 44/56 (78%)
Frame = -2
Query: 587 GMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQ 420
G+ ++SSPLQQM+FE+S FLK A + D+LRS S+CL+VG++ R GTG+F+L+
Sbjct: 1661 GIRSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVRGGTGLFELK 1716
Score = 49.6 bits (113), Expect = 1e-05
Identities = 22/57 (38%), Positives = 35/57 (61%)
Frame = -3
Query: 760 EIHXMANNVWHRXRQQSHHKGDTKRILTFXGITVDPRHLTLIADYMTYNGIFEPMSR 590
+IH +AN + K + K + GI VDPRHL+L+ADYM + G+++P++R
Sbjct: 1604 DIHAIANTYGIEAALRVIEK-EIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNR 1659
>BC117173-1|AAI17174.1| 1720|Homo sapiens polymerase (RNA) I
polypeptide A, 194kDa protein.
Length = 1720
Score = 68.1 bits (159), Expect = 4e-11
Identities = 30/56 (53%), Positives = 44/56 (78%)
Frame = -2
Query: 587 GMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQ 420
G+ ++SSPLQQM+FE+S FLK A + D+LRS S+CL+VG++ R GTG+F+L+
Sbjct: 1661 GIRSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVRGGTGLFELK 1716
Score = 49.6 bits (113), Expect = 1e-05
Identities = 22/57 (38%), Positives = 35/57 (61%)
Frame = -3
Query: 760 EIHXMANNVWHRXRQQSHHKGDTKRILTFXGITVDPRHLTLIADYMTYNGIFEPMSR 590
+IH +AN + K + K + GI VDPRHL+L+ADYM + G+++P++R
Sbjct: 1604 DIHAIANTYGIEAALRVIEK-EIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNR 1659
>BC017115-1|AAH17115.2| 574|Homo sapiens POLR1A protein protein.
Length = 574
Score = 68.1 bits (159), Expect = 4e-11
Identities = 30/56 (53%), Positives = 44/56 (78%)
Frame = -2
Query: 587 GMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQ 420
G+ ++SSPLQQM+FE+S FLK A + D+LRS S+CL+VG++ R GTG+F+L+
Sbjct: 515 GIRSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVRGGTGLFELK 570
Score = 49.6 bits (113), Expect = 1e-05
Identities = 22/57 (38%), Positives = 35/57 (61%)
Frame = -3
Query: 760 EIHXMANNVWHRXRQQSHHKGDTKRILTFXGITVDPRHLTLIADYMTYNGIFEPMSR 590
+IH +AN + K + K + GI VDPRHL+L+ADYM + G+++P++R
Sbjct: 458 DIHAIANTYGIEAALRVIEK-EIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNR 513
>AL117467-1|CAB55942.1| 95|Homo sapiens hypothetical protein
protein.
Length = 95
Score = 68.1 bits (159), Expect = 4e-11
Identities = 30/56 (53%), Positives = 44/56 (78%)
Frame = -2
Query: 587 GMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQ 420
G+ ++SSPLQQM+FE+S FLK A + D+LRS S+CL+VG++ R GTG+F+L+
Sbjct: 36 GIRSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVRGGTGLFELK 91
Score = 47.6 bits (108), Expect = 6e-05
Identities = 17/34 (50%), Positives = 26/34 (76%)
Frame = -3
Query: 691 KRILTFXGITVDPRHLTLIADYMTYNGIFEPMSR 590
K + GI VDPRHL+L+ADYM + G+++P++R
Sbjct: 1 KDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNR 34
>AK025568-1|BAB15171.1| 495|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21915 fis, clone HEP03920. ).
Length = 495
Score = 68.1 bits (159), Expect = 4e-11
Identities = 30/56 (53%), Positives = 44/56 (78%)
Frame = -2
Query: 587 GMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQ 420
G+ ++SSPLQQM+FE+S FLK A + D+LRS S+CL+VG++ R GTG+F+L+
Sbjct: 436 GIRSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVRGGTGLFELK 491
Score = 49.6 bits (113), Expect = 1e-05
Identities = 22/57 (38%), Positives = 35/57 (61%)
Frame = -3
Query: 760 EIHXMANNVWHRXRQQSHHKGDTKRILTFXGITVDPRHLTLIADYMTYNGIFEPMSR 590
+IH +AN + K + K + GI VDPRHL+L+ADYM + G+++P++R
Sbjct: 379 DIHAIANTYGIEAALRVIEK-EIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNR 434
>AC012511-1|AAY24277.1| 922|Homo sapiens unknown protein.
Length = 922
Score = 68.1 bits (159), Expect = 4e-11
Identities = 30/56 (53%), Positives = 44/56 (78%)
Frame = -2
Query: 587 GMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQ 420
G+ ++SSPLQQM+FE+S FLK A + D+LRS S+CL+VG++ R GTG+F+L+
Sbjct: 863 GIRSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVRGGTGLFELK 918
Score = 49.6 bits (113), Expect = 1e-05
Identities = 22/57 (38%), Positives = 35/57 (61%)
Frame = -3
Query: 760 EIHXMANNVWHRXRQQSHHKGDTKRILTFXGITVDPRHLTLIADYMTYNGIFEPMSR 590
+IH +AN + K + K + GI VDPRHL+L+ADYM + G+++P++R
Sbjct: 806 DIHAIANTYGIEAALRVIEK-EIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNR 861
>X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest
subunit protein.
Length = 1970
Score = 41.1 bits (92), Expect = 0.005
Identities = 18/50 (36%), Positives = 30/50 (60%)
Frame = -2
Query: 572 SSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 423
+ PL + SFE ++ L +A + + D ++ S +M+G+L GTG FDL
Sbjct: 1424 TGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDL 1473
>X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest
subunit protein.
Length = 1970
Score = 37.5 bits (83), Expect = 0.059
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = -2
Query: 572 SSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 423
+ PL + SFE ++ L +A + + ++ S +M+G+L GTG FDL
Sbjct: 1424 TGPLMKCSFEETVDVLMEAAAHGESYPMKGVSENIMLGQLAPAGTGCFDL 1473
>BC041089-1|AAH41089.1| 1390|Homo sapiens polymerase (RNA) III (DNA
directed) polypeptide A, 155kDa protein.
Length = 1390
Score = 35.1 bits (77), Expect = 0.31
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = -2
Query: 569 SPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQH 417
S L SFE + L DA +KD + S C+++G GTG+F L H
Sbjct: 1314 SVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLH 1364
>AY091462-1|AAM12032.1| 299|Homo sapiens RNA polymerase III subunit
RPC155-D protein.
Length = 299
Score = 35.1 bits (77), Expect = 0.31
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = -2
Query: 569 SPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQH 417
S L SFE + L DA +KD + S C+++G GTG+F L H
Sbjct: 223 SVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLH 273
>AL512628-1|CAI16466.1| 1390|Homo sapiens polymerase (RNA) III (DNA
directed) (155kD) (RPC155) protein.
Length = 1390
Score = 35.1 bits (77), Expect = 0.31
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = -2
Query: 569 SPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQH 417
S L SFE + L DA +KD + S C+++G GTG+F L H
Sbjct: 1314 SVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLH 1364
>AF021351-1|AAB86536.1| 1391|Homo sapiens RNA polymerase III largest
subunit protein.
Length = 1391
Score = 35.1 bits (77), Expect = 0.31
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = -2
Query: 569 SPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQH 417
S L SFE + L DA +KD + S C+++G GTG+F L H
Sbjct: 1315 SVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLH 1365
>AB189741-1|BAD89507.1| 1036|Homo sapiens Rho interacting protein
protein.
Length = 1036
Score = 31.5 bits (68), Expect = 3.9
Identities = 20/79 (25%), Positives = 35/79 (44%)
Frame = -2
Query: 596 EPEGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQH 417
+P+G S + S + FL++ L SK+++ +S + GR R +G F L+
Sbjct: 211 QPDGSSLSPAQSPSQSQPPAASFLREPGLESKEEESAMSSDRMDCGRKVRVESGYFSLEK 270
Query: 416 SHLYGKVNLSKS*PPRHSP 360
+ K + PP P
Sbjct: 271 TKQDLKAEEQQLPPPLSPP 289
>BC067781-1|AAH67781.1| 310|Homo sapiens EDG8 protein protein.
Length = 310
Score = 30.7 bits (66), Expect = 6.8
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = -1
Query: 588 RNGGVFVAVTANVVRIVAFVLE 523
R GGVFVA+TA+V+ ++A LE
Sbjct: 111 REGGVFVALTASVLSLLAIALE 132
>BC034703-1|AAH34703.1| 398|Homo sapiens endothelial
differentiation, sphingolipid G-protein-coupled
receptor, 8 protein.
Length = 398
Score = 30.7 bits (66), Expect = 6.8
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = -1
Query: 588 RNGGVFVAVTANVVRIVAFVLE 523
R GGVFVA+TA+V+ ++A LE
Sbjct: 111 REGGVFVALTASVLSLLAIALE 132
>AY262689-1|AAP20653.1| 398|Homo sapiens G-protein coupled receptor
EDG8 protein.
Length = 398
Score = 30.7 bits (66), Expect = 6.8
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = -1
Query: 588 RNGGVFVAVTANVVRIVAFVLE 523
R GGVFVA+TA+V+ ++A LE
Sbjct: 111 REGGVFVALTASVLSLLAIALE 132
>AK074661-1|BAC11119.1| 398|Homo sapiens 8. protein.
Length = 398
Score = 30.7 bits (66), Expect = 6.8
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = -1
Query: 588 RNGGVFVAVTANVVRIVAFVLE 523
R GGVFVA+TA+V+ ++A LE
Sbjct: 111 REGGVFVALTASVLSLLAIALE 132
>AF331840-1|AAL57041.1| 398|Homo sapiens SPPR protein.
Length = 398
Score = 30.7 bits (66), Expect = 6.8
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = -1
Query: 588 RNGGVFVAVTANVVRIVAFVLE 523
R GGVFVA+TA+V+ ++A LE
Sbjct: 111 REGGVFVALTASVLSLLAIALE 132
>AF317676-1|AAG38113.1| 398|Homo sapiens sphingosine 1-phosphate
receptor Edg-8 protein.
Length = 398
Score = 30.7 bits (66), Expect = 6.8
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = -1
Query: 588 RNGGVFVAVTANVVRIVAFVLE 523
R GGVFVA+TA+V+ ++A LE
Sbjct: 111 REGGVFVALTASVLSLLAIALE 132
>AB083602-1|BAB89315.1| 398|Homo sapiens putative G-protein coupled
receptor protein.
Length = 398
Score = 30.7 bits (66), Expect = 6.8
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = -1
Query: 588 RNGGVFVAVTANVVRIVAFVLE 523
R GGVFVA+TA+V+ ++A LE
Sbjct: 111 REGGVFVALTASVLSLLAIALE 132
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,472,378
Number of Sequences: 237096
Number of extensions: 1990176
Number of successful extensions: 4030
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 3875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4025
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10426655866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -