Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_E10
         (831 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y09103-1|CAA70321.1| 1644|Drosophila melanogaster largest subuni...    67   3e-11
AY121632-1|AAM51959.1|  542|Drosophila melanogaster GM01935p pro...    67   3e-11
AE013599-1910|AAF58234.1| 1642|Drosophila melanogaster CG10122-P...    67   3e-11
M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein ( D.me...    39   0.007
AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p pro...    39   0.007
AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA...    39   0.007

>Y09103-1|CAA70321.1| 1644|Drosophila melanogaster largest subunit of
            RNA polymeraseI (A) protein.
          Length = 1644

 Score = 66.9 bits (156), Expect = 3e-11
 Identities = 36/56 (64%), Positives = 40/56 (71%)
 Frame = -2

Query: 590  EGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 423
            +GME SSSPLQQMSFESSL FLK A    + D+L S SS LMVG   R GTG F+L
Sbjct: 1584 KGMEHSSSPLQQMSFESSLQFLKSAAGFGRADELSSPSSRLMVGLPVRNGTGAFEL 1639



 Score = 52.0 bits (119), Expect = 1e-06
 Identities = 26/58 (44%), Positives = 35/58 (60%)
 Frame = -3

Query: 760  EIHXMANNVWHRXRQQSHHKGDTKRILTFXGITVDPRHLTLIADYMTYNGIFEPMSRK 587
            +IH +A         Q   K +   +    GITVD RHL+LIADYMT++G F+P+SRK
Sbjct: 1528 DIHAIARTYGIEAASQVIVK-EVSNVFKVYGITVDRRHLSLIADYMTFDGTFQPLSRK 1584


>AY121632-1|AAM51959.1|  542|Drosophila melanogaster GM01935p
           protein.
          Length = 542

 Score = 66.9 bits (156), Expect = 3e-11
 Identities = 36/56 (64%), Positives = 40/56 (71%)
 Frame = -2

Query: 590 EGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 423
           +GME SSSPLQQMSFESSL FLK A    + D+L S SS LMVG   R GTG F+L
Sbjct: 482 KGMEHSSSPLQQMSFESSLQFLKSAAGFGRADELSSPSSRLMVGLPVRNGTGAFEL 537



 Score = 52.0 bits (119), Expect = 1e-06
 Identities = 26/58 (44%), Positives = 35/58 (60%)
 Frame = -3

Query: 760 EIHXMANNVWHRXRQQSHHKGDTKRILTFXGITVDPRHLTLIADYMTYNGIFEPMSRK 587
           +IH +A         Q   K +   +    GITVD RHL+LIADYMT++G F+P+SRK
Sbjct: 426 DIHAIARTYGIEAASQVIVK-EVSNVFKVYGITVDRRHLSLIADYMTFDGTFQPLSRK 482


>AE013599-1910|AAF58234.1| 1642|Drosophila melanogaster CG10122-PA
            protein.
          Length = 1642

 Score = 66.9 bits (156), Expect = 3e-11
 Identities = 36/56 (64%), Positives = 40/56 (71%)
 Frame = -2

Query: 590  EGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 423
            +GME SSSPLQQMSFESSL FLK A    + D+L S SS LMVG   R GTG F+L
Sbjct: 1582 KGMEHSSSPLQQMSFESSLQFLKSAAGFGRADELSSPSSRLMVGLPVRNGTGAFEL 1637



 Score = 52.0 bits (119), Expect = 1e-06
 Identities = 26/58 (44%), Positives = 35/58 (60%)
 Frame = -3

Query: 760  EIHXMANNVWHRXRQQSHHKGDTKRILTFXGITVDPRHLTLIADYMTYNGIFEPMSRK 587
            +IH +A         Q   K +   +    GITVD RHL+LIADYMT++G F+P+SRK
Sbjct: 1526 DIHAIARTYGIEAASQVIVK-EVSNVFKVYGITVDRRHLSLIADYMTFDGTFQPLSRK 1582


>M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein (
            D.melanogaster RpII215gene encoding RNA polymerase II,
            largest subunit, completecds. ).
          Length = 1896

 Score = 39.1 bits (87), Expect = 0.007
 Identities = 18/47 (38%), Positives = 30/47 (63%)
 Frame = -2

Query: 563  LQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 423
            L + SFE ++  L DA  +++ D +R  S  +++G+L + GTG FDL
Sbjct: 1419 LMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDL 1465


>AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p protein.
          Length = 1429

 Score = 39.1 bits (87), Expect = 0.007
 Identities = 18/47 (38%), Positives = 30/47 (63%)
 Frame = -2

Query: 563  LQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 423
            L + SFE ++  L DA  +++ D +R  S  +++G+L + GTG FDL
Sbjct: 961  LMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDL 1007


>AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA
            protein.
          Length = 1887

 Score = 39.1 bits (87), Expect = 0.007
 Identities = 18/47 (38%), Positives = 30/47 (63%)
 Frame = -2

Query: 563  LQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 423
            L + SFE ++  L DA  +++ D +R  S  +++G+L + GTG FDL
Sbjct: 1419 LMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDL 1465


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,341,959
Number of Sequences: 53049
Number of extensions: 663837
Number of successful extensions: 1627
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1624
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3942192384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)