Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_E10
(831 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93392-2|CAI46615.1| 120|Caenorhabditis elegans Hypothetical pr... 61 1e-09
Z93392-1|CAB07687.2| 1737|Caenorhabditis elegans Hypothetical pr... 61 1e-09
Z83219-10|CAI46565.1| 120|Caenorhabditis elegans Hypothetical p... 61 1e-09
Z83219-9|CAB05699.2| 1737|Caenorhabditis elegans Hypothetical pr... 61 1e-09
AL032648-9|CAB54460.1| 1737|Caenorhabditis elegans Hypothetical ... 61 1e-09
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 43 2e-04
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 42 5e-04
U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,... 34 0.11
U64848-2|AAM29669.2| 376|Caenorhabditis elegans Hypothetical pr... 31 0.77
AF067942-9|AAG45572.1| 347|Caenorhabditis elegans Hypothetical ... 31 1.0
U20864-1|AAC46663.1| 243|Caenorhabditis elegans Hypothetical pr... 29 4.1
U20864-2|AAN65320.1| 174|Caenorhabditis elegans Hypothetical pr... 29 5.4
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr... 28 7.1
>Z93392-2|CAI46615.1| 120|Caenorhabditis elegans Hypothetical
protein Y48E1A.1b protein.
Length = 120
Score = 60.9 bits (141), Expect = 1e-09
Identities = 27/54 (50%), Positives = 44/54 (81%)
Frame = -2
Query: 584 MEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 423
M +SSSPLQ+M+FE+++ FL++A+L+ ++D++ S S+ L++G L R GTG FDL
Sbjct: 40 MSSSSSPLQKMTFETTMAFLREALLHGEEDNVNSPSARLVMGALPRGGTGSFDL 93
Score = 37.5 bits (83), Expect = 0.012
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -3
Query: 697 DTKRILTFXGITVDPRHLTLIADYMTYNGIFEPMSR 590
+ + GI V RHL+L ADYMT+ G +P +R
Sbjct: 2 EMNNVFAVYGIEVSKRHLSLTADYMTFTGQIQPFNR 37
>Z93392-1|CAB07687.2| 1737|Caenorhabditis elegans Hypothetical protein
Y48E1A.1a protein.
Length = 1737
Score = 60.9 bits (141), Expect = 1e-09
Identities = 27/54 (50%), Positives = 44/54 (81%)
Frame = -2
Query: 584 MEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 423
M +SSSPLQ+M+FE+++ FL++A+L+ ++D++ S S+ L++G L R GTG FDL
Sbjct: 1657 MSSSSSPLQKMTFETTMAFLREALLHGEEDNVNSPSARLVMGALPRGGTGSFDL 1710
Score = 37.5 bits (83), Expect = 0.012
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -3
Query: 697 DTKRILTFXGITVDPRHLTLIADYMTYNGIFEPMSR 590
+ + GI V RHL+L ADYMT+ G +P +R
Sbjct: 1619 EMNNVFAVYGIEVSKRHLSLTADYMTFTGQIQPFNR 1654
>Z83219-10|CAI46565.1| 120|Caenorhabditis elegans Hypothetical
protein Y48E1A.1b protein.
Length = 120
Score = 60.9 bits (141), Expect = 1e-09
Identities = 27/54 (50%), Positives = 44/54 (81%)
Frame = -2
Query: 584 MEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 423
M +SSSPLQ+M+FE+++ FL++A+L+ ++D++ S S+ L++G L R GTG FDL
Sbjct: 40 MSSSSSPLQKMTFETTMAFLREALLHGEEDNVNSPSARLVMGALPRGGTGSFDL 93
Score = 37.5 bits (83), Expect = 0.012
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -3
Query: 697 DTKRILTFXGITVDPRHLTLIADYMTYNGIFEPMSR 590
+ + GI V RHL+L ADYMT+ G +P +R
Sbjct: 2 EMNNVFAVYGIEVSKRHLSLTADYMTFTGQIQPFNR 37
>Z83219-9|CAB05699.2| 1737|Caenorhabditis elegans Hypothetical protein
Y48E1A.1a protein.
Length = 1737
Score = 60.9 bits (141), Expect = 1e-09
Identities = 27/54 (50%), Positives = 44/54 (81%)
Frame = -2
Query: 584 MEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 423
M +SSSPLQ+M+FE+++ FL++A+L+ ++D++ S S+ L++G L R GTG FDL
Sbjct: 1657 MSSSSSPLQKMTFETTMAFLREALLHGEEDNVNSPSARLVMGALPRGGTGSFDL 1710
Score = 37.5 bits (83), Expect = 0.012
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -3
Query: 697 DTKRILTFXGITVDPRHLTLIADYMTYNGIFEPMSR 590
+ + GI V RHL+L ADYMT+ G +P +R
Sbjct: 1619 EMNNVFAVYGIEVSKRHLSLTADYMTFTGQIQPFNR 1654
>AL032648-9|CAB54460.1| 1737|Caenorhabditis elegans Hypothetical
protein Y48E1A.1a protein.
Length = 1737
Score = 60.9 bits (141), Expect = 1e-09
Identities = 27/54 (50%), Positives = 44/54 (81%)
Frame = -2
Query: 584 MEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 423
M +SSSPLQ+M+FE+++ FL++A+L+ ++D++ S S+ L++G L R GTG FDL
Sbjct: 1657 MSSSSSPLQKMTFETTMAFLREALLHGEEDNVNSPSARLVMGALPRGGTGSFDL 1710
Score = 37.5 bits (83), Expect = 0.012
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -3
Query: 697 DTKRILTFXGITVDPRHLTLIADYMTYNGIFEPMSR 590
+ + GI V RHL+L ADYMT+ G +P +R
Sbjct: 1619 EMNNVFAVYGIEVSKRHLSLTADYMTFTGQIQPFNR 1654
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = -2
Query: 602 AYEPEGMEASS-SPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFD 426
AY G+ L + SFE ++ L +A +++++D ++ S +M+G+L R GTG FD
Sbjct: 1408 AYSRHGINRQEVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFD 1467
Query: 425 L 423
L
Sbjct: 1468 L 1468
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 41.9 bits (94), Expect = 5e-04
Identities = 18/47 (38%), Positives = 32/47 (68%)
Frame = -2
Query: 563 LQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 423
L + SFE ++ L +A +++++D ++ S +M+G+L R GTG FDL
Sbjct: 1415 LMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDL 1461
>U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,
class iii (c) protein1 protein.
Length = 1400
Score = 34.3 bits (75), Expect = 0.11
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -2
Query: 584 MEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQHSH 411
++ S L SFE ++ L +A S++D + S C+++G GTG F L +
Sbjct: 1323 VKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTGTFKLMQKY 1380
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -3
Query: 670 GITVDPRHLTLIADYMTYNG 611
GI +D RH+ L+AD MTY G
Sbjct: 1293 GIGLDRRHVMLLADVMTYRG 1312
>U64848-2|AAM29669.2| 376|Caenorhabditis elegans Hypothetical
protein C50E3.6 protein.
Length = 376
Score = 31.5 bits (68), Expect = 0.77
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 448 RHSRPTIRQLEADRRSSFLEFNMASFKNKSDDS 546
+ S P + Q DR S L N+ASF SDD+
Sbjct: 247 KESSPILLQKRGDRSSDHLHHNVASFSRNSDDN 279
>AF067942-9|AAG45572.1| 347|Caenorhabditis elegans Hypothetical
protein ZK6.2 protein.
Length = 347
Score = 31.1 bits (67), Expect = 1.0
Identities = 19/73 (26%), Positives = 31/73 (42%)
Frame = +1
Query: 373 GGHDLDRLTLPYKCECCRSNTPVPVRHSRPTIRQLEADRRSSFLEFNMASFKNKSDDSND 552
G + +R KC CR + V S P+ L + L+ + + +N + ND
Sbjct: 48 GENCFERPPFTRKCAACRFQKCLHVGMSLPSFLHLGEQNKEKCLDGIIRNLENLNFKRND 107
Query: 553 ICCNGDEDASIPS 591
+ CN + S PS
Sbjct: 108 LTCNYRNNFSNPS 120
>U20864-1|AAC46663.1| 243|Caenorhabditis elegans Hypothetical
protein F32A5.4a protein.
Length = 243
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 445 VRHSRPTIRQLEADRRSSFLEFNMASFKNKSDDSNDICC-NGDEDASIPSGS*AQRSRCT 621
V + +R + + RR + M+ +N+ SND+ G++D SIP + S CT
Sbjct: 71 VEQYKTQLRNILSQRRENLRNRLMSQGRNQQQQSNDVSSQGGNDDGSIPKAP-EKPSFCT 129
Query: 622 S 624
+
Sbjct: 130 A 130
>U20864-2|AAN65320.1| 174|Caenorhabditis elegans Hypothetical
protein F32A5.4b protein.
Length = 174
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 451 HSRPTIRQLEADRRSSFLEFNMASFKNKSDDSNDICC-NGDEDASIPSGS*AQRSRCTS 624
H +R + + RR + M+ +N+ SND+ G++D SIP + S CT+
Sbjct: 4 HFFQQLRNILSQRRENLRNRLMSQGRNQQQQSNDVSSQGGNDDGSIPKAP-EKPSFCTA 61
>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
F54B3.1b protein.
Length = 3394
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 656 INSDTXKR*NTFGISFMMTLLAXSMPYVVG 745
+N D K+ +TF I+F+ T + +P++VG
Sbjct: 1512 VNFDGRKKTDTFPINFLPTCIHELLPFIVG 1541
>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
F54B3.1a protein.
Length = 3396
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 656 INSDTXKR*NTFGISFMMTLLAXSMPYVVG 745
+N D K+ +TF I+F+ T + +P++VG
Sbjct: 1512 VNFDGRKKTDTFPINFLPTCIHELLPFIVG 1541
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,325,299
Number of Sequences: 27780
Number of extensions: 329004
Number of successful extensions: 820
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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