Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_E10
         (831 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    25   0.86 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   3.5  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   4.6  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   4.6  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   8.0  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 25.0 bits (52), Expect = 0.86
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 376 RRVIHRAFRSVEGAWLYGLKSFAFP 302
           R  + RA RS+ GAWL  L  FA P
Sbjct: 144 RSGLKRAIRSIFGAWLIAL-IFAMP 167


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 403 PYKCECCRSNTPVPVRHSR 459
           PY+C  C     VP R +R
Sbjct: 91  PYRCNICGKTFAVPARLTR 109


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = -2

Query: 233 NRTEYASFIQ--QPRSEDLANKLKAN*SVFFSRLIMKYAH*VYMIYSNH*NQNMN 75
           N  EY  + +  + RS+D   +  +      S L   Y +  Y  Y+N+ N N N
Sbjct: 52  NEREYRKYRETSKERSQDRTERETSKEPKIISSLSNNYKYSNYNNYNNNYNNNYN 106


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = -2

Query: 233 NRTEYASFIQ--QPRSEDLANKLKAN*SVFFSRLIMKYAH*VYMIYSNH*NQNMN 75
           N  EY  + +  + RS+D   +  +      S L   Y +  Y  Y+N+ N N N
Sbjct: 52  NEREYRKYRETSKERSQDRTERETSKEPKIISSLSNNYKYSNYNNYNNNYNNNYN 106


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 71  NNSYFDFNDYYKSYTLN 121
           NN+Y ++N+Y  +Y  N
Sbjct: 331 NNNYNNYNNYNNNYNNN 347


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,829
Number of Sequences: 438
Number of extensions: 3653
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)