Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_E09
(801 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 159 4e-40
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|... 29 0.58
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 27 2.3
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S... 26 5.4
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 25 9.5
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 25 9.5
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 25 9.5
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 25 9.5
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 25 9.5
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 25 9.5
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 159 bits (386), Expect = 4e-40
Identities = 87/199 (43%), Positives = 110/199 (55%)
Frame = -1
Query: 720 PLSVVIPAHNTGLGPEKTSFFQALSIPTKISRVLLKSSTMYTS*SPVTKVGASEATLLNM 541
PL V +PA NTG+ P KTSFFQAL IPTKI+R ++ ++ S KVG SEATLLNM
Sbjct: 116 PLDVFVPAGNTGMEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNM 175
Query: 540 LNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASA 361
LNISPF+YG+ V +YD G +F+PEILD+ EDL + + + A+SL YPTI S
Sbjct: 176 LNISPFTYGMDVLTIYDQGNVFSPEILDVSEEDLIGHLLSAASIITAISLGANYPTILSV 235
Query: 360 PHSIANGFKNLLAIXXXXXXXXXXXXTIKEFIKDPSKFXXXXXXXXXXXXXXXXXXXXXX 181
HS+ N +KNL+A+ K F+ DPS F
Sbjct: 236 MHSVVNAYKNLVAVSLATEYTFEGTEQTKAFLADPSAF--VVAAAPAAAAGGEAEAPAAE 293
Query: 180 XXXXXXXXSDDDMGFGLFD 124
SD+DMGFGLFD
Sbjct: 294 AAAEEEEESDEDMGFGLFD 312
>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
Alp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 29.5 bits (63), Expect = 0.58
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = -1
Query: 633 ISRVLLKSSTMYTS*SPVTKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDI 454
IS VL K + S P + G+ L +SPFS + + +YD T P L+I
Sbjct: 5 ISSVLAKEESENGSPIPALEEGSVYHVSLKSEGVSPFSDRIQLNYLYDGKTFSDPSNLNI 64
Query: 453 KPED 442
++
Sbjct: 65 HQQE 68
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 27.5 bits (58), Expect = 2.3
Identities = 20/69 (28%), Positives = 34/69 (49%)
Frame = +1
Query: 262 LNELLDGGSFFKLNLCGSSDGQKVLETIGNGMRG*SNSWVTNSQRKSSYISNSSLELGTE 441
L L+ G S+ SSDG + + + ++ + SWV ++R S IS S E+ +
Sbjct: 82 LRRLIQGNSYRIFGTGKSSDGLATYKLLLDELKSLTKSWVM-AKRFSDAISGSDSEVFED 140
Query: 442 IFWFDVQNF 468
FD++ F
Sbjct: 141 ---FDIEAF 146
>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 673
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 467 SGAKIVPESYTCLTTRPYENGEMFNMLRRVASEAPTLVTGLQDV 598
S +V +S TCL + NGE+ + ++S + T T +Q++
Sbjct: 204 SSWNVVGDSATCLLSCSSRNGEIRILKIAISSHSDTFDTAMQEL 247
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1
Query: 153 DDDMGFGLFD 124
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1
Query: 153 DDDMGFGLFD 124
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1
Query: 153 DDDMGFGLFD 124
D+DMGFGLFD
Sbjct: 100 DEDMGFGLFD 109
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1
Query: 153 DDDMGFGLFD 124
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1
Query: 153 DDDMGFGLFD 124
D+DMGFGLFD
Sbjct: 100 DEDMGFGLFD 109
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1
Query: 153 DDDMGFGLFD 124
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,769,395
Number of Sequences: 5004
Number of extensions: 51997
Number of successful extensions: 123
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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