Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_E06
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   4.6  
SPAC21E11.03c |pcr1|mts2|transcription factor Pcr1|Schizosacchar...    26   6.1  

>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 3/100 (3%)
 Frame = -1

Query: 738 SRLKTRSVDDRRSRKKEQNKNAATRYRQXXXXXXXXXXXXEQTLRQRHTELGEKCSDLQR 559
           S+LK R  DD+  R   Q ++    Y +             QTL +++T   ++   +Q 
Sbjct: 420 SKLKKR--DDKLKRVSSQLEHLKHNYEEEKSMNENLLVRI-QTLEKQNTTKSDQIVSMQF 476

Query: 558 EIRYLKALMRDL---FKAKGLIK*INQQRRLQRNKTICKN 448
           +I  L   +RDL     A   I+ + Q   LQ    +  N
Sbjct: 477 QINDLNEQLRDLMFTISASQEIQKMGQSEELQNGTIVLPN 516


>SPAC21E11.03c |pcr1|mts2|transcription factor
           Pcr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 171

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = -1

Query: 729 KTRSVDDRRSRK-KEQNKNAATRYRQXXXXXXXXXXXXEQTLRQRHTELGEKCSDLQREI 553
           K + VDD + R+  E+N+ AA+++RQ                 ++   L    S LQ+E 
Sbjct: 4   KKKEVDDEKRRRILERNRIAASKFRQKKKEWIKELEQTANAAFEQSKRLQLLLSQLQQEA 63

Query: 552 RYLKA 538
             LK+
Sbjct: 64  FRLKS 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,856,786
Number of Sequences: 5004
Number of extensions: 51699
Number of successful extensions: 97
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)