Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_E04
(825 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0262 - 1930552-1930632,1931096-1931152,1931236-1931287,193... 181 7e-46
09_03_0117 - 12486672-12486818,12487438-12487488,12487583-124877... 152 3e-37
03_02_0477 - 8770905-8770985,8771164-8771361,8771939-8772025,877... 142 3e-34
10_02_0022 - 4290708-4290788,4291254-4291305,4291396-4291484,429... 122 3e-28
03_02_0365 - 7816966-7817046,7817441-7817492,7817590-7817678,781... 116 3e-26
04_04_1032 - 30259180-30260519,30260650-30260720,30261099-302621... 29 5.9
>06_01_0262 -
1930552-1930632,1931096-1931152,1931236-1931287,
1931373-1931461,1931551-1931601,1931696-1931890,
1932015-1932095,1932205-1932267,1933045-1933119,
1933194-1933352,1933353-1933463,1933536-1933616,
1933721-1933807,1933920-1933967,1934357-1934421,
1935002-1935065,1935220-1935288
Length = 475
Score = 181 bits (440), Expect = 7e-46
Identities = 86/111 (77%), Positives = 95/111 (85%)
Frame = -2
Query: 587 VTNPKRIATAVEKKACNCLLLKVNQIGSVTESIDAHLLAKKNGWGTMVSHRSGETEDTFI 408
VTNP R+A A+ +K CN LLLKVNQIGSVTESI+A ++K+ GWG M SHRSGETEDTFI
Sbjct: 362 VTNPTRVAKAISEKTCNALLLKVNQIGSVTESIEAVRMSKRAGWGVMASHRSGETEDTFI 421
Query: 407 ADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGVNAKYAGKNFRRPV 255
ADL VGLSTGQIKTGAPCRSERLAKYNQ+LRIEEELG A YAG+ FR PV
Sbjct: 422 ADLSVGLSTGQIKTGAPCRSERLAKYNQLLRIEEELGDAAVYAGEKFRAPV 472
Score = 45.6 bits (103), Expect = 5e-05
Identities = 22/44 (50%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = -1
Query: 717 VYLTSSKIFPWCPXEDPFDQDDWSAWANLTGR--TPIQIVGDDL 592
VY + +P EDPFDQDDW+ +A LT +QIVGDDL
Sbjct: 317 VYKSFVSEYPIVSIEDPFDQDDWATYAKLTDEIGQQVQIVGDDL 360
>09_03_0117 -
12486672-12486818,12487438-12487488,12487583-12487729,
12488037-12488354,12488450-12488604,12488941-12489248,
12490644-12491038
Length = 506
Score = 152 bits (369), Expect = 3e-37
Identities = 73/90 (81%), Positives = 79/90 (87%)
Frame = -2
Query: 587 VTNPKRIATAVEKKACNCLLLKVNQIGSVTESIDAHLLAKKNGWGTMVSHRSGETEDTFI 408
VTNPKRIA A+ KKACN LLLKVNQIG+VTESI A L +K GWG MVSHRSGETED FI
Sbjct: 371 VTNPKRIAEAIGKKACNALLLKVNQIGTVTESIQAALDSKAAGWGVMVSHRSGETEDNFI 430
Query: 407 ADLVVGLSTGQIKTGAPCRSERLAKYNQIL 318
ADL VGL++GQIKTGAPCRSERLAKYNQI+
Sbjct: 431 ADLAVGLASGQIKTGAPCRSERLAKYNQIV 460
Score = 55.6 bits (128), Expect = 5e-08
Identities = 25/42 (59%), Positives = 28/42 (66%)
Frame = -1
Query: 717 VYLTSSKIFPWCPXEDPFDQDDWSAWANLTGRTPIQIVGDDL 592
+Y K FP EDPFDQDDWS+WA+L IQIVGDDL
Sbjct: 328 LYKEFVKDFPIVSIEDPFDQDDWSSWASLQSSVNIQIVGDDL 369
>03_02_0477 -
8770905-8770985,8771164-8771361,8771939-8772025,
8772094-8772179,8772270-8772368,8772431-8772551,
8773251-8773331,8773643-8773723,8773972-8774088,
8774185-8774256,8774621-8775055
Length = 485
Score = 142 bits (344), Expect = 3e-34
Identities = 65/108 (60%), Positives = 84/108 (77%)
Frame = -2
Query: 587 VTNPKRIATAVEKKACNCLLLKVNQIGSVTESIDAHLLAKKNGWGTMVSHRSGETEDTFI 408
+++P+RI AV + CN L+LK NQ+G+VTE+I+ AK WG MVSHRSG+T+D+FI
Sbjct: 372 MSDPERIKRAVNEYTCNALVLKANQVGTVTEAIEVVRQAKDAHWGVMVSHRSGDTDDSFI 431
Query: 407 ADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGVNAKYAGKNFR 264
ADL VG + GQIK GAPCR E L+KYNQ+LRIEEELG + YAG+N+R
Sbjct: 432 ADLAVGAAAGQIKAGAPCRGECLSKYNQLLRIEEELGSDGVYAGENWR 479
Score = 35.5 bits (78), Expect = 0.052
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -1
Query: 717 VYLTSSKIFPWCPXEDPFDQDDWSAWANLTGRTPIQIVGDDL 592
+Y +P E PFD+DDW T Q+VGDDL
Sbjct: 329 IYSQLCSEYPLVSIEQPFDKDDWEHSKKFTTLELCQVVGDDL 370
>10_02_0022 -
4290708-4290788,4291254-4291305,4291396-4291484,
4291565-4291615,4291699-4291893,4292010-4292090,
4292190-4292252,4292480-4292554,4292630-4292710,
4292784-4292888,4292977-4293057,4293156-4293242,
4293322-4293369,4293923-4293987,4294109-4294172,
4294828-4294896
Length = 428
Score = 122 bits (295), Expect = 3e-28
Identities = 66/111 (59%), Positives = 77/111 (69%)
Frame = -2
Query: 587 VTNPKRIATAVEKKACNCLLLKVNQIGSVTESIDAHLLAKKNGWGTMVSHRSGETEDTFI 408
VTNP R+A A+++K+CN LLLKVNQIGSVTESI+A ++K+ GWG M SHRSGETEDTFI
Sbjct: 334 VTNPTRVAKAIQEKSCNALLLKVNQIGSVTESIEAVKMSKRAGWGVMTSHRSGETEDTFI 393
Query: 407 ADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGVNAKYAGKNFRRPV 255
ADL VGL+T +LRIEEELG A YAG FR PV
Sbjct: 394 ADLAVGLAT-------------------LLRIEEELGAAAVYAGAKFRAPV 425
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = -1
Query: 717 VYLTSSKIFPWCPXEDPFDQDDWSAWANLTGR--TPIQIVGDDL 592
VY + +P EDPFDQDDW +A +T +QIVGDDL
Sbjct: 289 VYKSFVSEYPIVSIEDPFDQDDWEHYAKMTAEIGEQVQIVGDDL 332
>03_02_0365 -
7816966-7817046,7817441-7817492,7817590-7817678,
7817762-7817854,7817900-7818094,7818172-7818249,
7818353-7818415,7818806-7818880,7818958-7819038,
7819329-7819409,7819516-7819602,7819682-7819729,
7820317-7820381,7820566-7820629,7821254-7821322
Length = 406
Score = 116 bits (278), Expect = 3e-26
Identities = 64/107 (59%), Positives = 73/107 (68%)
Frame = -2
Query: 575 KRIATAVEKKACNCLLLKVNQIGSVTESIDAHLLAKKNGWGTMVSHRSGETEDTFIADLV 396
+R+A A++ KACN LLLKVNQIGSVTESI+A ++K+ GWG M SHRSGETEDTFIADL
Sbjct: 316 QRVAKAIKDKACNALLLKVNQIGSVTESIEAVKMSKRAGWGVMTSHRSGETEDTFIADLA 375
Query: 395 VGLSTGQIKTGAPCRSERLAKYNQILRIEEELGVNAKYAGKNFRRPV 255
VGLST +LRIEEELG A YAG FR PV
Sbjct: 376 VGLST-------------------LLRIEEELGAAAVYAGAKFRAPV 403
Score = 42.3 bits (95), Expect = 5e-04
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = -1
Query: 717 VYLTSSKIFPWCPXEDPFDQDDWSAWANLTGR--TPIQIVGDDL 592
VY + +P EDPFDQDDW +A +T +QIVGDDL
Sbjct: 253 VYKSFVSEYPIVSIEDPFDQDDWVHYAKMTEEIGDQVQIVGDDL 296
>04_04_1032 -
30259180-30260519,30260650-30260720,30261099-30262118,
30263886-30264121
Length = 888
Score = 28.7 bits (61), Expect = 5.9
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = -3
Query: 316 ALKRNLASTPNTPGRTSVDRSKNSLKKT*NSVFLSYPHFDSNKKSSIDY 170
ALKR + T G S+DRS +SLK + V S P+ +S SS Y
Sbjct: 515 ALKRPMGKTD---GNISLDRSNSSLKGSLYRVNESNPNMESTGASSHQY 560
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,110,819
Number of Sequences: 37544
Number of extensions: 378239
Number of successful extensions: 819
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -