Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_E03
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   105   1e-23
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    28   1.4  
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...    28   1.8  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    27   3.2  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    27   4.2  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    26   5.5  
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    25   9.7  
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    25   9.7  
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    25   9.7  
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    25   9.7  
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    25   9.7  
SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1 |Sc...    25   9.7  
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    25   9.7  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  105 bits (251), Expect = 1e-23
 Identities = 47/86 (54%), Positives = 61/86 (70%)
 Frame = -2

Query: 577 KVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAAL 398
           KVG SEATLLNMLNISPF+YG+ V  +YD G +F+PEILD+  EDL     +  + + A+
Sbjct: 164 KVGPSEATLLNMLNISPFTYGMDVLTIYDQGNVFSPEILDVSEEDLIGHLLSAASIITAI 223

Query: 397 SLAIGYPTIASAPHSIANGFKNLLAI 320
           SL   YPTI S  HS+ N +KNL+A+
Sbjct: 224 SLGANYPTILSVMHSVVNAYKNLVAV 249



 Score = 97.1 bits (231), Expect = 3e-21
 Identities = 44/68 (64%), Positives = 55/68 (80%)
 Frame = -1

Query: 794 DLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIE 615
           DL EVR+ ++ N + APARP AIAPL V +PA NTG+ P KTSFFQAL IPTKI++GTIE
Sbjct: 92  DLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTGMEPGKTSFFQALGIPTKITRGTIE 151

Query: 614 IINDVHIL 591
           I +DVH++
Sbjct: 152 ITSDVHLV 159



 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -3

Query: 153 DDDMGFGLFD 124
           D+DMGFGLFD
Sbjct: 303 DEDMGFGLFD 312


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 610 MISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAMAP 735
           +IS  P + L+GI  AW  E  S  R  +    T+    +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330


>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 19/53 (35%), Positives = 30/53 (56%)
 Frame = +3

Query: 567 APTLXTGLQDVYIVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGNDD*QWG 725
           AP L  G  D+ IVD  NS   +  R  + L ++G+L+  +GV GG +  ++G
Sbjct: 92  APLLEKG--DI-IVDGGNSHYPDTTRRCEELAKKGILFVGSGVSGGEEGARYG 141


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 468 SGAKIVPESYTCLTTRPYENGEMFNMLRRVASEAPTLXTGLQDV 599
           S   +V +S TCL +    NGE+  +   ++S + T  T +Q++
Sbjct: 204 SSWNVVGDSATCLLSCSSRNGEIRILKIAISSHSDTFDTAMQEL 247


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = -2

Query: 625 VLLKSSTMYTS*SPVXKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPE 446
           VL K  +   S  P  + G+     L    +SPFS  + +  +YD  T   P  L+I  +
Sbjct: 8   VLAKEESENGSPIPALEEGSVYHVSLKSEGVSPFSDRIQLNYLYDGKTFSDPSNLNIHQQ 67

Query: 445 D 443
           +
Sbjct: 68  E 68


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +2

Query: 284 GSFFKLNLCDSSDGQKVLETIGNGMRG*SNSWVTNSQRKSSYISNSS 424
           G FF  + CD + G K  +   N       S   N   K++Y +N S
Sbjct: 405 GKFFSQHSCDLASGNKSAQEGQNQFLSMVESEAKNLMNKTNYSANQS 451


>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -3

Query: 153 DDDMGFGLFD 124
           D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110


>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -3

Query: 153 DDDMGFGLFD 124
           D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -3

Query: 153 DDDMGFGLFD 124
           D+DMGFGLFD
Sbjct: 100 DEDMGFGLFD 109


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -3

Query: 153 DDDMGFGLFD 124
           D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110


>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -3

Query: 153 DDDMGFGLFD 124
           D+DMGFGLFD
Sbjct: 100 DEDMGFGLFD 109


>SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 215

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 603 IVDDFNSTL*NLGRDRKSL 659
           +VD  NSTL N+GR R S+
Sbjct: 98  VVDSVNSTLNNIGRGRLSV 116


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -3

Query: 153 DDDMGFGLFD 124
           D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,739,297
Number of Sequences: 5004
Number of extensions: 49630
Number of successful extensions: 118
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)