Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_D24
(1043 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 276 4e-75
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 271 9e-74
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 111 1e-25
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 59 1e-09
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 30 0.47
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.9
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 28 1.9
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 7.6
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 276 bits (676), Expect = 4e-75
Identities = 122/162 (75%), Positives = 140/162 (86%)
Frame = -3
Query: 618 SAESXXEQXSXAEITNAXXEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKT 439
+A++ E S EITN EP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ +IK+
Sbjct: 282 AAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKS 341
Query: 438 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLVKVQRAVCMLSNTTAIAEAWARLDHKFDL 259
+RTIQFVDWCPTGFK+GI Y+PP VPG + KV RAVCMLSNTT+IAEAW+RLDHKFDL
Sbjct: 342 RRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDL 401
Query: 258 MYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 133
MY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 402 MYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDS 443
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 271 bits (665), Expect = 9e-74
Identities = 121/162 (74%), Positives = 138/162 (85%)
Frame = -3
Query: 618 SAESXXEQXSXAEITNAXXEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKT 439
+A++ E S EITN EP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ TIK
Sbjct: 278 AAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKA 337
Query: 438 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLVKVQRAVCMLSNTTAIAEAWARLDHKFDL 259
KRTIQFVDWCPTGFK+GI +PP + G ++ KV RAVCMLSNTT+IAEAW+RLDHKFDL
Sbjct: 338 KRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDL 397
Query: 258 MYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 133
MY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 398 MYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDS 439
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 111 bits (268), Expect = 1e-25
Identities = 58/161 (36%), Positives = 89/161 (55%), Gaps = 3/161 (1%)
Frame = -3
Query: 609 SXXEQXSXAEITNAXXEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRT 430
S + S E+T + N MV DPRHG+Y+ L+RG V K+V+ I +++TK +
Sbjct: 279 SSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNS 338
Query: 429 IQFVDWCPTGFKVGINYQPPTVVPGGDLVKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 250
FV+W P + PP DL + + + N+T+I E + RL +F M+
Sbjct: 339 AYFVEWIPDNVLKAVCSVPPK-----DL---KMSATFIGNSTSIQEIFRRLGDQFSAMFR 390
Query: 249 KRAFVHWYVGEGMEEGEFSEAR---EDLAALEKDYEEVGMD 136
++AF+HWY GEGM+E EF+EA DL + + Y+E G+D
Sbjct: 391 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAGID 431
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 58.8 bits (136), Expect = 1e-09
Identities = 37/140 (26%), Positives = 71/140 (50%), Gaps = 4/140 (2%)
Frame = -3
Query: 558 PANQMVKCDP-RHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGIN 382
P NQMV +P + +++ + +G+ P DV+ ++ I+ +R F+ W P +V ++
Sbjct: 302 PKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALS 361
Query: 381 YQPPTVVPGGDLVKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE- 205
+ P + + + ML+N T+IA + R ++D + + AF+ Y E + E
Sbjct: 362 KKSPYIKTNHRV-----SGLMLANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFED 416
Query: 204 --GEFSEAREDLAALEKDYE 151
EF +R+ +A L +YE
Sbjct: 417 DLNEFDSSRDVVADLINEYE 436
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 30.3 bits (65), Expect = 0.47
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = -1
Query: 491 VVTSYPRT*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 357
VV P RP++P P LS V PV+ V + PP P
Sbjct: 552 VVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.3 bits (60), Expect = 1.9
Identities = 35/116 (30%), Positives = 47/116 (40%), Gaps = 2/116 (1%)
Frame = -1
Query: 536 ATPVMASTWLAVCCTVVTSYPRT*TRPSLPSKPSVLSNSSTGVQPVSRSVSTT--SHPPW 363
+TPV +S + T VTS P T T + + SVL S+ P S S S+T S
Sbjct: 565 STPVTSSNYTISSSTPVTSTPVTTT--NCTTSTSVLYTSTPITSPNSTSSSSTQVSWNST 622
Query: 362 CPEATWSRFNVXXXXXXXXXXXPKLGLALTTSSTSCTPSVLSCTGTSVRVWRRESS 195
P S V + T+S++ T S S T TS + ESS
Sbjct: 623 TPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSISTSS--SSTATSSTSFASESS 676
Score = 27.9 bits (59), Expect = 2.5
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = -1
Query: 536 ATPVMASTWLAVCCTVVTSYPRT*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTS 375
+TPV ++ CT TS P T T P S ++ S++ PV+ + TTS
Sbjct: 542 STPVTSTPLATTNCTTSTSVPYTST-PVTSSNYTISSSTPVTSTPVTTTNCTTS 594
Score = 26.6 bits (56), Expect = 5.8
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = -1
Query: 536 ATPVMASTWLAVCCTVVTSYPRT*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHP 369
+TPV ++ CT TS P T T + S P +N +T S TS P
Sbjct: 437 STPVTSTPLATTNCTTSTSVPYTST--PVTSTPLTTTNCTTSTSIPYTSTPVTSTP 490
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 28.3 bits (60), Expect = 1.9
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -1
Query: 287 GLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS--RRITKKSAWTPLKARVR 114
G+ TS TS T S S++ S+P P W P+ S+ TP+ V
Sbjct: 148 GVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTPVYVVVD 207
Query: 113 EPKSTK 96
EP+ TK
Sbjct: 208 EPRFTK 213
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 7.6
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -1
Query: 455 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 369
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,835,062
Number of Sequences: 5004
Number of extensions: 50032
Number of successful extensions: 188
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 547228964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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