Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_D22
         (844 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    35   0.017
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    28   1.9  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.5  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   5.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   5.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   7.7  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 34.7 bits (76), Expect = 0.017
 Identities = 26/83 (31%), Positives = 29/83 (34%)
 Frame = -3

Query: 743  IPKPGXTPVXKPXPYPGRKTXALPPXKYTXXAQCPSMSRSQFRTPVKVPVPAPYPRREAH 564
            +P P   P   P P P      +PP         PS        P     P P P  EA 
Sbjct: 1191 VPPPSEAP---PVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEA- 1246

Query: 563  PVPSRKGRAVPS*HPRRQAIPSP 495
            P  S    +VPS  P   A PSP
Sbjct: 1247 PSVSTPRSSVPS--PHSNASPSP 1267



 Score = 29.1 bits (62), Expect = 0.82
 Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
 Frame = -3

Query: 743  IPKPGXTPVXKPXPYPGRKTXALPPXKYTXXAQCPSMSRSQFRTPVKVP---VPAPYPRR 573
            +P P  TP   P P       + PP      ++ PS+       PV  P    P P P  
Sbjct: 1043 VPIPTSTP---PVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSV 1099

Query: 572  EAHPVPSRKGRAVP 531
             A PVP +   AVP
Sbjct: 1100 AAPPVP-KPSVAVP 1112



 Score = 26.6 bits (56), Expect = 4.4
 Identities = 15/44 (34%), Positives = 18/44 (40%)
 Frame = -1

Query: 628  EASSVPPSRYQCPPLTPVEKHIPYPVEKAVPFPVNIPVDRPYPV 497
            EA  VP      PP+ P     P P   A   PV +P  +  PV
Sbjct: 1196 EAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPV 1239


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 612 PRQGTSARPLPPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRS 484
           PR+  +  PLPPS  +  +   RP  S   SP +  T S +++
Sbjct: 392 PRKNINFTPLPPSTPSKPSTFVRPHSSSTDSPPSPSTPSNTQT 434


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = -2

Query: 603 GTSARPLPPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRTQLRY 436
           GTS+ PL  + ++  T    P     T+P T     TS ST L T      T + Y
Sbjct: 380 GTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPY 435



 Score = 25.8 bits (54), Expect = 7.7
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -2

Query: 603 GTSARPLPPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRST 481
           GTS+ PLP + ++  T    P     T+P T     TS S+
Sbjct: 326 GTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSS 366


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -1

Query: 616  VPPSRYQCPPLTPVEKHIPYPVEKAVPFPVNIPVDRP 506
            +PP   + PP++     IP P   +   P +  V RP
Sbjct: 1054 LPPVSSRLPPVSATRPQIPQPPPVSTALPSSSAVSRP 1090


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 17/58 (29%), Positives = 20/58 (34%)
 Frame = -3

Query: 758 PYPXQIPKPGXTPVXKPXPYPGRKTXALPPXKYTXXAQCPSMSRSQFRTPVKVPVPAP 585
           P P    +    P   P   PGR   ALPP         P +      TP  +P  AP
Sbjct: 376 PPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVP-----TPPSLPPSAP 428


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 19/68 (27%), Positives = 24/68 (35%)
 Frame = -3

Query: 731  GXTPVXKPXPYPGRKTXALPPXKYTXXAQCPSMSRSQFRTPVKVPVPAPYPRREAHPVPS 552
            G  P       P R   A PP         P MS      P   P+PA  P     P+P+
Sbjct: 1680 GMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPP--PPSAPPMPAGPPSAPPPPLPA 1737

Query: 551  RKGRAVPS 528
                +VP+
Sbjct: 1738 SSAPSVPN 1745


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,581,888
Number of Sequences: 5004
Number of extensions: 44423
Number of successful extensions: 179
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)