Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_D21
         (799 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin pr...    44   2e-04
AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin ...    44   2e-04
Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U88165-5|AAK21392.1|  393|Caenorhabditis elegans Downstream of m...    29   3.9  
U34893-1|AAB01720.1|  393|Caenorhabditis elegans DOM-3 protein.        29   3.9  

>X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin
           protein.
          Length = 395

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 18/28 (64%), Positives = 22/28 (78%)
 Frame = -2

Query: 726 AVGLDLWQVKSGTIFDDFLITDDPAAAK 643
           A+G DLWQVKSGTIFD+ +ITD    A+
Sbjct: 308 AIGFDLWQVKSGTIFDNIIITDSVEEAE 335


>AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin
           protein 1 protein.
          Length = 395

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 18/28 (64%), Positives = 22/28 (78%)
 Frame = -2

Query: 726 AVGLDLWQVKSGTIFDDFLITDDPAAAK 643
           A+G DLWQVKSGTIFD+ +ITD    A+
Sbjct: 308 AIGFDLWQVKSGTIFDNIIITDSVEEAE 335


>Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical
           protein ZK632.6 protein.
          Length = 619

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = -2

Query: 732 ICAVGLDLWQVKSGTIFDDFLIT---DDPAAAKERGEVIKXRQE 610
           I AVG+++W +    +FD+ LIT   +D +   ++   +K ++E
Sbjct: 411 ITAVGIEMWTMSENILFDNILITSSEEDSSDVAKQTFYVKQKEE 454


>U88165-5|AAK21392.1|  393|Caenorhabditis elegans Downstream of mes
           (in same operon)protein 3 protein.
          Length = 393

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +3

Query: 153 HVPAHGARPITKH*IITYIN---SERNPHLHGHQYETTDTYLLTHNMSLRIGKIRAKHTH 323
           H+P    +P+     I + N     RNP     Q +    Y + ++  L++G++RAK  H
Sbjct: 28  HIPKITGQPLPNEVQIPFDNMIYETRNPPKFEKQAKFISEYCINYDRKLQLGRMRAKKFH 87


>U34893-1|AAB01720.1|  393|Caenorhabditis elegans DOM-3 protein.
          Length = 393

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +3

Query: 153 HVPAHGARPITKH*IITYIN---SERNPHLHGHQYETTDTYLLTHNMSLRIGKIRAKHTH 323
           H+P    +P+     I + N     RNP     Q +    Y + ++  L++G++RAK  H
Sbjct: 28  HIPKITGQPLPNEVQIPFDNMIYETRNPPKFEKQAKFISEYCINYDRKLQLGRMRAKKFH 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,103,448
Number of Sequences: 27780
Number of extensions: 271516
Number of successful extensions: 704
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)